将经典人工智能与农业相结合:预测杀虫剂亲和性以提高杀虫剂开发效率的新型模型

IF 2.6 4区 生物学 Q2 BIOLOGY Computational Biology and Chemistry Pub Date : 2024-05-27 DOI:10.1016/j.compbiolchem.2024.108113
Jia-Lin Cui , Hua Li , Qi He , Bin-Yan Jin , Zhe Liu , Xiao-Ming Zhang , Li Zhang
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引用次数: 0

摘要

将人工智能(AI)融入智慧农业,可以提高生产和管理效率,促进农业可持续发展。在集约化农业管理中,采用环保、高效的杀虫剂对于促进绿色农业实践至关重要。然而,探索新的杀虫剂品种是一项艰巨而耗时的任务,而且涉及重大风险。在先导发现阶段提高化合物的可药性可大大缩短发现周期,加快杀虫剂的研发。杀虫活性预测(IAPred)模型是一种基于人工智能的新型经典方法,用于评估未知功能化合物的潜在杀虫活性。IAPred 模型利用了 PaDEL 描述符中的 27 个杀虫相似性特征,并采用了支持向量机(SVM)和随机森林(RF)算法的集合,使用了硬投票机制,准确率达到了 86%。值得注意的是,IAPred 模型准确预测了新型杀虫剂(如烟碱氟虫腈等)的药效,克服了现有杀虫剂结构固有的局限性,优于现有模型。我们的研究为快速高效地发现和优化新型杀虫剂先导化合物提供了一种实用方法。
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Integrating classic AI and agriculture: A novel model for predicting insecticide-likeness to enhance efficiency in insecticide development

The integration of artificial intelligence (AI) into smart agriculture boosts production and management efficiency, facilitating sustainable agricultural development. In intensive agricultural management, adopting eco-friendly and effective pesticides is crucial to promote green agricultural practices. However, exploring new insecticides species is a difficult and time-consuming task that involves significant risks. Enhancing compound druggability in the lead discovery phase could considerably shorten the discovery cycle, accelerating insecticides research and development. The Insecticide Activity Prediction (IAPred) model, a novel classic artificial intelligence-based method for evaluating the potential insecticidal activity of unknown functional compounds, is introduced in this study. The IAPred model utilized 27 insecticide-likeness features from PaDEL descriptors and employed an ensemble of Support Vector Machine (SVM) and Random Forest (RF) algorithms using the hard-vote mechanism, achieving an accuracy rate of 86 %. Notably, the IAPred model outperforms current models by accurately predicting the efficacy of novel insecticides such as nicofluprole, overcoming the limitations inherent in existing insecticide structures. Our research presents a practical approach for discovering and optimizing novel insecticide lead compounds quickly and efficiently.

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来源期刊
Computational Biology and Chemistry
Computational Biology and Chemistry 生物-计算机:跨学科应用
CiteScore
6.10
自引率
3.20%
发文量
142
审稿时长
24 days
期刊介绍: Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered. Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered. Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.
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