综合生物信息学和验证揭示了 PTGS2 及其相关分子可缓解 TNF-α 诱导的内皮衰老。

IF 1.5 4区 生物学 Q4 CELL BIOLOGY In Vitro Cellular & Developmental Biology. Animal Pub Date : 2024-09-01 Epub Date: 2024-06-10 DOI:10.1007/s11626-024-00931-1
Hongjie Xu, He Wang, Xiaoping Ning, Zhiyun Xu, Guanxin Zhang
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摘要

越来越多的证据表明,细胞衰老与铁蛋白沉积之间存在相互作用。本研究旨在探讨 TNF-α 诱导的内皮细胞衰老中与铁代谢相关的分子标记。本研究使用微阵列表达数据集(GSE195517),通过加权基因共表达网络分析(WGCNA)确定不同表达的铁衰老相关基因(DEFRGs)。通过 GO 和 KEGG 分析来探索其生物学功能。此外,还通过蛋白-蛋白相互作用(PPI)分析确定了枢纽基因,并通过实时 qPCR(RT-qPCR)进行了验证。然后,建立了一个药物基因网络,以预测枢纽基因的潜在药物。在TNF-α诱导的HUVEC衰老中,有7个DEFRG被识别。此外,通过PPI分析确定了四个枢纽基因(PTGS2、TNFAIP3、CXCL2和IL6上调),并通过RT-qPCR进行了验证。进一步分析表明,PTGS2 亚细胞位于质膜。此外,在氨基水杨酸(ASA)被确定为靶向衰老 HUVEC 中 PTGS2 的铁突变抑制剂后,5-ASA 和 4-ASA 被证实可通过铁突变缓解 TNF-α 诱导的 HUVEC 衰老。PTGS2可能在TNF-α诱导的HUVEC衰老中发挥作用,ASA可能是通过铁变态反应缓解TNF-α诱导的HUVEC衰老的潜在药物。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Integrated bioinformatics and validation reveal PTGS2 and its related molecules to alleviate TNF-α-induced endothelial senescence.

Accumulative evidences have indicated the interaction between cellular senescence and ferroptosis. This study intends to investigate the ferroptosis-related molecular markers in TNF-α-induced endothelial senescence. The microarray expression dataset (GSE195517) was used to identify the differently expressed ferroptosis-related genes (DEFRGs) through weighted gene co-expressed network analysis (WGCNA). GO and KEGG were performed to explore the biological function. Furthermore, hub genes were identified after protein-protein interaction (PPI) analysis and validated through real-time qPCR (RT-qPCR). Then, a drug-gene network was established to predict potential drugs for the hub genes. Seven DEFRGs were recognized in the TNF-α-induced HUVEC senescence. Moreover, four hub genes (PTGS2, TNFAIP3, CXCL2, and IL6 are upregulated) were identified by PPI analysis and validated by RT-qPCR. Further analysis exhibited that PTGS2 was subcellularly located in the plasma membrane. Furthermore, after aminosalicylic acid (ASA) was identified as ferroptosis inhibitor for targeting PTGS2 in senescent HUVECs, 5-ASA and 4-ASA were verified to alleviate TNF-α-induced HUVEC senescence through ferroptosis. PTGS2 might play a role in TNF-α-induced HUVEC senescence and ASA may be the potential drug for alleviating TNF-α-induced HUVEC senescence through ferroptosis.

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来源期刊
CiteScore
3.70
自引率
4.80%
发文量
96
审稿时长
3 months
期刊介绍: In Vitro Cellular & Developmental Biology - Animal is a journal of the Society for In Vitro Biology (SIVB). Original manuscripts reporting results of research in cellular, molecular, and developmental biology that employ or are relevant to organs, tissue, tumors, and cells in vitro will be considered for publication. Topics covered include: Biotechnology; Cell and Tissue Models; Cell Growth/Differentiation/Apoptosis; Cellular Pathology/Virology; Cytokines/Growth Factors/Adhesion Factors; Establishment of Cell Lines; Signal Transduction; Stem Cells; Toxicology/Chemical Carcinogenesis; Product Applications.
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