图灵模型的鲁棒性和具有甜点的基因调控网络

Roozbeh H. Pazuki, Robert G. Endres
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引用次数: 0

摘要

基于矩阵对角化的传统线性稳定性分析对于高维微分方程系统来说是一个计算密集的过程,这对需要研究额外波数参数的图灵模式形成系统的探索造成了很大限制。在本文中,我们介绍了一种高效、直观的技术,利用格什高林定理来确定参数空间和波数区域的上限,超过这个上限,图灵不稳定性就不会发生。这种方法为探索其他复杂的多参数模型(如系统生物学中的基因调控网络)的相图提供了一种简化的途径。由于该方法适用于无限大系统的渐近极限,它预测了最大雅各布稳定性的网络规模存在一个甜蜜点。 美国物理学会出版 2024
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Robustness of Turing models and gene regulatory networks with a sweet spot
Traditional linear stability analysis based on matrix diagonalization is a computationally intensive process for high-dimensional systems of differential equations, posing substantial limitations for the exploration of Turing systems of pattern formation where an additional wave-number parameter needs to be investigated. In this paper, we introduce an efficient and intuitive technique that leverages Gershgorin's theorem to determine upper limits on regions of parameter space and the wave number beyond which Turing instabilities cannot occur. This method offers a streamlined avenue for exploring the phase diagrams of other complex multi-parametric models, such as those found in gene regulatory networks in systems biology. Due to its suitability for the asymptotic limit of infinitely large systems, it predicts the existence of a sweet spot in network size for maximal Jacobian stability. Published by the American Physical Society 2024
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