基于系统性可用药全基因组孟德尔随机化确定糖尿病治疗靶点

Hu Li, Wei Li, Dongyang Li, Lijuan Yuan, Yucheng Xu, Pengtao Su, Liqiang Wu, Zhiqiang Zhang
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摘要

糖尿病及其并发症给全世界造成了沉重的疾病负担。近年来,孟德尔随机化(Mendelian randomization,MR)被广泛应用于发现疾病的发病机制和流行病学,以及发现新的治疗靶点。因此,基于系统的 "可药用 "基因组学,我们旨在确定糖尿病的新治疗靶点,并分析其病理生理机制,以促进其新的治疗策略。我们使用双样本 MR 来整合已确定的可药用基因组学,以评估血液中可药用基因表达的定量性状位点(eQTLs)对 1 型和 2 型糖尿病(T1DM 和 T2DM)的因果效应。使用糖尿病及其并发症的不同数据源重复研究,以验证已识别的基因。不仅如此,我们还使用贝叶斯共定位分析法评估不同因果变异、共享因果变异和共定位概率的后验概率,以检查遗传混杂的可能性。最后,我们利用有全基因组关联研究数据的糖尿病标记物,评估了已确定的糖尿病标记物之间的因果关系,以探索可能的机制。经过Bonferroni显著性检验(P<1.90e-05)、MR Steiger方向性检验、贝叶斯共定位分析和不同数据集验证等方法筛选,最终确定了7个可能影响T1DM结果的潜在可药用基因和7个可能影响T2DM结果的潜在可药用基因。反向MR表明,C4B在T1DM的发病机制中可能起双向作用,而其他13个靶基因都不存在反向因果关系。本研究提供的遗传学证据支持了靶向 7 个可药用基因(即 MAP3K13、KCNJ11、REG4、KIF11、CCNE2、PEAK1 和 NRBP1)治疗 T2DM 的潜在疗效。同样,靶向 ERBB3、C4B、CD69、PTPN22、IL27、ATP2A1 和 LT-β 这七个可药用基因也对 T1DM 的治疗有潜在的疗效。这将为糖尿病的治疗提供新的思路,也有助于确定糖尿病药物开发的优先顺序。
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Based on systematic druggable genome-wide Mendelian randomization identifies therapeutic targets for diabetes
Diabetes and its complications cause a heavy burden of disease worldwide. In recent years, Mendelian randomization (MR) has been widely used to discover the pathogenesis and epidemiology of diseases, as well as to discover new therapeutic targets. Therefore, based on systematic “druggable” genomics, we aim to identify new therapeutic targets for diabetes and analyze its pathophysiological mechanisms to promote its new therapeutic strategies.We used double sample MR to integrate the identified druggable genomics to evaluate the causal effect of quantitative trait loci (eQTLs) expressed by druggable genes in blood on type 1 and 2 diabetes (T1DM and T2DM). Repeat the study using different data sources on diabetes and its complications to verify the identified genes. Not only that, we also use Bayesian co-localization analysis to evaluate the posterior probabilities of different causal variations, shared causal variations, and co-localization probabilities to examine the possibility of genetic confounding. Finally, using diabetes markers with available genome-wide association studies data, we evaluated the causal relationship between established diabetes markers to explore possible mechanisms.Overall, a total of 4,477 unique druggable genes have been gathered. After filtering using methods such as Bonferroni significance (P<1.90e-05), the MR Steiger directionality test, Bayesian co-localization analysis, and validation with different datasets, Finally, 7 potential druggable genes that may affect the results of T1DM and 7 potential druggable genes that may affect the results of T2DM were identified. Reverse MR suggests that C4B may play a bidirectional role in the pathogenesis of T1DM, and none of the other 13 target genes have a reverse causal relationship. And the 7 target genes in T2DM may each affect the biomarkers of T2DM to mediate the pathogenesis of T2DM.This study provides genetic evidence supporting the potential therapeutic benefits of targeting seven druggable genes, namely MAP3K13, KCNJ11, REG4, KIF11, CCNE2, PEAK1, and NRBP1, for T2DM treatment. Similarly, targeting seven druggable genes, namely ERBB3, C4B, CD69, PTPN22, IL27, ATP2A1, and LT-β, has The potential therapeutic benefits of T1DM treatment. This will provide new ideas for the treatment of diabetes and also help to determine the priority of drug development for diabetes.
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