{"title":"基于 SMT 的非线性连续和混合动力学参数可识别组合检测","authors":"Devleena Ghosh, C. Mandal","doi":"10.1145/3665920","DOIUrl":null,"url":null,"abstract":"Parameter identifiability is an important aspect of parameter estimation of dynamic system modelling. Several methods exist to determine identifiability of parameter sets using the model definition and analysis of experimental data. There is also the possibility of some parameters being independently unidentifiable but forming identifiable parameter combinations. These identifiable parameter combinations are useful in model reparameterisation to estimate parameters experimentally. Multiple numerical and algebraic methods exist to detect identifiable parameter combinations of dynamic system models represented as ordinary differential equations (ODE). Local identifiability analysis of hybrid system models are available in the literature. However, methods for structural identifiability analysis and identifiable combination detection for hybrid systems are not explored. Here, we have developed a parameter identifiable combination detection method for non-linear hybrid systems along with ODE systems using an SMT based parameter space exploration method. For higher dimensional systems and larger parameter space, SMT based approaches may easily become computationally intractable. This problem has been mitigated to a large extent by heuristically limiting the parameter space to be explored, using Gaussian process regression and gradient based approaches. The developed method has been demonstrated for some simple hybrid models, biochemical models of ODE systems and non-linear hybrid systems.","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":"21 S1","pages":""},"PeriodicalIF":17.7000,"publicationDate":"2024-06-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"SMT based parameter identifiable combination detection for non-linear continuous and hybrid dynamics\",\"authors\":\"Devleena Ghosh, C. Mandal\",\"doi\":\"10.1145/3665920\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Parameter identifiability is an important aspect of parameter estimation of dynamic system modelling. Several methods exist to determine identifiability of parameter sets using the model definition and analysis of experimental data. There is also the possibility of some parameters being independently unidentifiable but forming identifiable parameter combinations. These identifiable parameter combinations are useful in model reparameterisation to estimate parameters experimentally. Multiple numerical and algebraic methods exist to detect identifiable parameter combinations of dynamic system models represented as ordinary differential equations (ODE). Local identifiability analysis of hybrid system models are available in the literature. However, methods for structural identifiability analysis and identifiable combination detection for hybrid systems are not explored. Here, we have developed a parameter identifiable combination detection method for non-linear hybrid systems along with ODE systems using an SMT based parameter space exploration method. For higher dimensional systems and larger parameter space, SMT based approaches may easily become computationally intractable. This problem has been mitigated to a large extent by heuristically limiting the parameter space to be explored, using Gaussian process regression and gradient based approaches. The developed method has been demonstrated for some simple hybrid models, biochemical models of ODE systems and non-linear hybrid systems.\",\"PeriodicalId\":1,\"journal\":{\"name\":\"Accounts of Chemical Research\",\"volume\":\"21 S1\",\"pages\":\"\"},\"PeriodicalIF\":17.7000,\"publicationDate\":\"2024-06-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Accounts of Chemical Research\",\"FirstCategoryId\":\"94\",\"ListUrlMain\":\"https://doi.org/10.1145/3665920\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"94","ListUrlMain":"https://doi.org/10.1145/3665920","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
SMT based parameter identifiable combination detection for non-linear continuous and hybrid dynamics
Parameter identifiability is an important aspect of parameter estimation of dynamic system modelling. Several methods exist to determine identifiability of parameter sets using the model definition and analysis of experimental data. There is also the possibility of some parameters being independently unidentifiable but forming identifiable parameter combinations. These identifiable parameter combinations are useful in model reparameterisation to estimate parameters experimentally. Multiple numerical and algebraic methods exist to detect identifiable parameter combinations of dynamic system models represented as ordinary differential equations (ODE). Local identifiability analysis of hybrid system models are available in the literature. However, methods for structural identifiability analysis and identifiable combination detection for hybrid systems are not explored. Here, we have developed a parameter identifiable combination detection method for non-linear hybrid systems along with ODE systems using an SMT based parameter space exploration method. For higher dimensional systems and larger parameter space, SMT based approaches may easily become computationally intractable. This problem has been mitigated to a large extent by heuristically limiting the parameter space to be explored, using Gaussian process regression and gradient based approaches. The developed method has been demonstrated for some simple hybrid models, biochemical models of ODE systems and non-linear hybrid systems.
期刊介绍:
Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance.
Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.