用曲面方程计算二面角的 Java 脚本程序

C. Mitan, Emerich Bartha, Petru A. Filip, C. Draghici, M. Cǎproiu, R. Moriarty
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摘要

Java Script 程序,用于利用 3 球方法的流形方程从核磁共振数据计算二面角:矩形、环形的 Villarceau 圆(Torus - Dupin Cyclide)、极性方程、Euler-Conic。曲面是高维曲线或曲面,用于计算 NMR 数据波形特征下的二面角、碳和/或质子化学位移 δXn[ppm]以及邻接耦合常数 3JHnHn+1[Hz]。根据核磁共振数据计算二面角的 3 球方法分为四个步骤:1.1. 预测,或更准确地说用三角方程根据邻接耦合常数计算二面角; 2. 根据流形方程计算二面角; 3. 根据其中一个流形方程计算的角度建立单位; 4. 计算流形二面角的邻接耦合常数。本文介绍了第 2 步的 Java Script 程序,第 3 步仅介绍了计算七组角度的 Java Script 程序。两个碳原子之间的键距 lCnCn+1[A0]处于不同的极性方程下(即利马逊方程或心形方程,玫瑰方程或lemniscale方程),我们的期望是找到不同的流形方程来计算最佳角度,虽然差异较小,但有时可以为邻接耦合常数找到首选方程。3 球方法的优点是可以根据邻角或/和化学位移计算二面角、四面角和键距 lCnCn+1[A0] ,并可应用于构象和构型分析。
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Java Script Programs for Calculation of Dihedral Angles with Manifold Equations
Java Script programs for calculation dihedral angles from NMR data with manifold equations of 3-Sphere approach: rectangle, Villarceau circles of cyclide (Torus – Dupin Cyclide), polar equations, Euler-Conic. Manifolds are curves or surface in higher dimension used for calculation of dihedral angles under wave character of NMR data, carbon and/or proton chemical shift δXn[ppm] and vicinal coupling constant 3JHnHn+1[Hz]. 3-Sphere approach for calculation of the dihedral angles from NMR data in four steps: 1. Prediction, or more exactly calculation of the dihedral angles from vicinal coupling constant with trigonometric equations, 2. Calculation of the dihedral angles from manifold equations; 3. Building units from angle calculated with one of the manifold equations; 4. Calculation the vicinal coupling constant of the manifold dihedral angle. In this paper are presented Java Script programs of step 2 and from step 3 only the Java Script program for calculation of seven sets angles. The bond distances lCnCn+1[A0] between two atoms of carbon are under different polar equations (i.e. limaçons or cardioid, rose or lemniscale), our expectation was to find different manifold equations for calculation the best angle, differences are smaller but can be find sometimes a preferred one for a vicinal coupling constant. 3-Sphere approach has the advantages of calculation from vicinal angle or/and chemical shift the dihedral angle, tetrahedral angle and the bond distance lCnCn+1[A0], with application on conformational and configurational analysis.
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