基于 CRABPII 的微生物拟红蛋白的激发态动力学。

IF 2.8 2区 化学 Q3 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry B Pub Date : 2024-08-15 Epub Date: 2024-06-28 DOI:10.1021/acs.jpcb.4c01296
Gaoshang Li, Jiajia Meng, Shuang Yu, Xiaolu Bai, Jin Dai, Yin Song, Xubiao Peng, Qing Zhao
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引用次数: 0

摘要

微生物视紫红质是一种重要的感光蛋白,已在光遗传学、生物技术、生物设备等多个领域获得广泛应用。然而,目前的微生物犀牛蛋白都是跨膜蛋白,这既增加了光反应机制研究的复杂性,也限制了它们的进一步应用。因此,一种特异性的微生物犀牛蛋白模拟物不仅能为了解其机理提供更好的模型,还能扩大其应用范围。人类蛋白质 CRABPII 具有合成方便和突变后稳定的特点,因此成为设计犀牛蛋白模拟物的良好模板。最近,Geiger 等人在微生物视紫红质上设计了一种基于 CRABPII 的新模拟物 M1-L121E,辐照后会发生 13-顺式、syn(13C)异构化。然而,它与天然微生物视紫红质的相似性如何,特别是在光反应动力学方面,仍然是一个问题。在本文中,我们通过测量这种模拟物的瞬态吸收光谱来研究其激发态动力学。我们的研究结果表明,在 pH 值为 8 时,模拟物 M1-L121E 的溶液中有两种成分,即质子化席夫碱(PSB)和非质子化席夫碱(USB)状态。在这两种状态下,从 13-顺式、合成(13C)到全反式、反(AT)的光反应过程比反向的光反应过程更快。此外,PSB 状态下的光反应过程要快于 USB 状态下的光反应过程。我们将 PSB 状态下的异构化时间与微生物视紫红质的异构化时间进行了比较。我们的研究结果表明,M1-L121E 在 PSB 异构化的一般模式上表现出与微生物犀牛蛋白类似的行为,即从 13C 到 AT 的异构化速度远远快于其反向异构化速度。然而,我们的研究结果还揭示了该模拟物与原生微生物犀牛蛋白在激发态动力学方面的显著差异,包括较慢的 PSB 异构化速率以及在 pH = 8 时不寻常的 USB 光反应动力学。 通过阐明模拟物 M1-L121E 的独特特征,本研究加深了我们对微生物犀牛蛋白模拟物及其潜在应用的了解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Excited-State Dynamics of a CRABPII-Based Microbial Rhodopsin Mimic.

Microbial rhodopsin, a pivotal photoreceptor protein, has garnered widespread application in diverse fields such as optogenetics, biotechnology, biodevices, etc. However, current microbial rhodopsins are all transmembrane proteins, which both complicates the investigation on the photoreaction mechanism and limits their further applications. Therefore, a specific mimic for microbial rhodopsin can not only provide a better model for understanding the mechanism but also can extend the applications. The human protein CRABPII turns out to be a good template for design mimics on rhodopsin due to the convenience in synthesis and the stability after mutations. Recently, Geiger et al. designed a new CRABPII-based mimic M1-L121E on microbial rhodopsin with the 13-cis, syn (13C) isomerization after irradiation. However, it still remains a question as to how similar it is compared with the natural microbial rhodopsin, in particular, in the aspect of the photoreaction dynamics. In this article, we investigate the excited-state dynamics of this mimic by measuring its transient absorption spectra. Our results reveal that there are two components in the solution of mimic M1-L121E at pH 8, known as protonated Schiff base (PSB) and unprotonated Schiff base (USB) states. In both states, the photoreaction process from 13-cis, syn(13C) to all-trans,anti (AT) is faster than that from the inverse direction. In addition, the photoreaction process in the PSB state is faster than that in the USB state. We compared the isomerization time of the PSB state to that of microbial rhodopsin. Our findings indicate that M1-L121E exhibits behaviors similar to those of microbial rhodopsins in the general pattern of PSB isomerization, where the isomerization from 13C to AT is much faster than its inverse direction. However, our results also reveal significant differences in the excited-state dynamics of the mimic relative to the native microbial rhodopsin, including the slower PSB isomerization rates as well as the unusual USB photoreaction dynamics at pH = 8. By elucidating the distinctive characteristics of mimics M1-L121E, this study enhances our understanding of microbial rhodopsin mimics and their potential applications.

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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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