基于 LASSO 算法建立精神分裂症线粒体代谢相关诊断模型

IF 1.8 4区 医学 Q3 PSYCHIATRY Psychiatry Investigation Pub Date : 2024-06-01 Epub Date: 2024-06-24 DOI:10.30773/pi.2024.0011
Yinfang Liu, Han Lin, Meicen Liu, Liping Lin, Yaohui Wen
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引用次数: 0

摘要

目的:精神分裂症是一种常见的精神疾病,线粒体功能是精神疾病的潜在治疗靶点。线粒体代谢相关基因(MRGs)在精神分裂症诊断中的作用仍然未知。本研究旨在根据线粒体代谢相关基因找出可能影响精神分裂症诊断和治疗的候选基因:方法:从基因表达总库(Gene Expression Omnibus)数据库中获取三个精神分裂症数据集。从相关文献中收集了 MRGs。使用 limma 软件包筛选正常样本与精神分裂症样本之间的差异表达基因。进行维恩分析以确定精神分裂症的差异表达 MRGs(DEMRGs)。基于 STRING 数据库,使用 Cytoscape 中的 MCODE 算法确定了 DEMRGs 中的枢纽基因。利用 LASSO 回归和逻辑回归分析构建了包含枢纽基因的诊断模型。利用 DSigDB 数据库探讨了中心基因与药物敏感性之间的关系。利用Network-Analyst网站创建了miRNA-转录因子(TF)-枢纽基因之间的相互作用网络:结果:共鉴定出1,234个MRGs、172个DEMRGs和6个具有良好诊断性能的中枢基因。筛选出 10 种潜在候选药物(利福平、氟维司群、十五氟辛酸等)。结果发现了34个针对诊断模型中基因(ANGPTL4、CPT2、GLUD1、MED1和MED20)的miRNAs以及137个TFs:利福平、氟维司群和十五氟辛酸是未来研究治疗精神分裂症的潜在药物。这些发现为了解精神分裂症的发病机制、诊断和药物治疗提供了宝贵的证据。
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Establishment of a Mitochondrial Metabolism-Related Diagnostic Model in Schizophrenia Based on LASSO Algorithm.

Objective: Schizophrenia is a common mental disorder, and mitochondrial function represents a potential therapeutic target for psychiatric diseases. The role of mitochondrial metabolism-related genes (MRGs) in the diagnosis of schizophrenia remains unknown. This study aimed to identify candidate genes that may influence the diagnosis and treatment of schizophrenia based on MRGs.

Methods: Three schizophrenia datasets were obtained from the Gene Expression Omnibus database. MRGs were collected from relevant literature. The differentially expressed genes between normal samples and schizophrenia samples were screened using the limma package. Venn analysis was performed to identify differentially expressed MRGs (DEMRGs) in schizophrenia. Based on the STRING database, hub genes in DEMRGs were identified using the MCODE algorithm in Cytoscape. A diagnostic model containing hub genes was constructed using LASSO regression and logistic regression analysis. The relationship between hub genes and drug sensitivity was explored using the DSigDB database. An interaction network between miRNA-transcription factor (TF)-hub genes was created using the Network-Analyst website.

Results: A total of 1,234 MRGs, 172 DEMRGs, and 6 hub genes with good diagnostic performance were identified. Ten potential candidate drugs (rifampicin, fulvestrant, pentadecafluorooctanoic acid, etc.) were selected. Thirty-four miRNAs targeting genes in the diagnostic model (ANGPTL4, CPT2, GLUD1, MED1, and MED20), as well as 137 TFs, were identified.

Conclusion: Six potential candidate genes showed promising diagnostic significance. rifampicin, fulvestrant, and pentadecafluorooctanoic acid were potential drugs for future research in the treatment of schizophrenia. These findings provided valuable evidence for the understanding of schizophrenia pathogenesis, diagnosis, and drug treatment.

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来源期刊
CiteScore
4.10
自引率
3.70%
发文量
105
审稿时长
6-12 weeks
期刊介绍: The Psychiatry Investigation is published on the 25th day of every month in English by the Korean Neuropsychiatric Association (KNPA). The Journal covers the whole range of psychiatry and neuroscience. Both basic and clinical contributions are encouraged from all disciplines and research areas relevant to the pathophysiology and management of neuropsychiatric disorders and symptoms, as well as researches related to cross cultural psychiatry and ethnic issues in psychiatry. The Journal publishes editorials, review articles, original articles, brief reports, viewpoints and correspondences. All research articles are peer reviewed. Contributions are accepted for publication on the condition that their substance has not been published or submitted for publication elsewhere. Authors submitting papers to the Journal (serially or otherwise) with a common theme or using data derived from the same sample (or a subset thereof) must send details of all relevant previous publications and simultaneous submissions. The Journal is not responsible for statements made by contributors. Material in the Journal does not necessarily reflect the views of the Editor or of the KNPA. Manuscripts accepted for publication are copy-edited to improve readability and to ensure conformity with house style.
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