可解释的深度学习框架:解码大脑状态和预测幼儿期虚假信念任务中的个体表现

IF 2.5 4区 医学 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY Frontiers in Neuroinformatics Pub Date : 2024-06-28 DOI:10.3389/fninf.2024.1392661
Km Bhavna, Azman Akhter, Romi Banerjee, Dipanjan Roy
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引用次数: 0

摘要

认知状态解码旨在识别个人的大脑状态和大脑指纹,从而预测行为。深度学习为分析不同发育阶段的大脑信号以了解大脑动态提供了一个重要平台。由于其内部架构和特征提取技术的原因,现有的机器学习和深度学习方法存在分类性能低、可解释性差等问题,必须加以改进。在本研究中,我们假设即使在幼儿阶段(早至 3 岁),大脑区域之间的连接性也能解码大脑状态,并预测虚假信念任务中的行为表现。为此,我们提出了一个可解释的深度学习框架,以解码大脑状态(心智理论和疼痛状态),并预测发育数据集中与心智理论相关的虚假信念任务中的个体表现。我们提出了一种可解释的基于时空连接的图卷积神经网络(Ex-stGCNN)模型,用于解码大脑状态。在这里,我们考虑了一个发育数据集,N = 155(122 名儿童;3-12 岁和 33 名成人;18-39 岁),其中参与者观看了一部无声动画短片,影片显示激活了心智理论(ToM)和疼痛网络。扫描结束后,参与者接受了与 ToM 相关的虚假信念任务,根据表现分为通过组、失败组和不一致组。我们使用功能连接(FC)和受试者间功能相关性(ISFC)矩阵分别训练了我们提出的模型。我们观察到,刺激驱动特征集(ISFC)能更准确地捕捉 ToM 和疼痛的大脑状态,平均准确率为 94%,而使用 FC 矩阵的准确率为 85%。我们还使用五倍交叉验证对结果进行了验证,平均准确率达到 92%。除了这项研究,我们还应用了 SHapley Additive exPlanations(SHAP)方法来识别对预测贡献最大的大脑指纹。我们假设 ToM 网络的大脑连通性可以预测个人在错误信念任务中的表现。我们提出了一个可解释卷积变异自动编码器(Ex-Convolutional VAE)模型来预测个人在虚假信念任务中的表现,并分别使用 FC 和 ISFC 矩阵对该模型进行了训练。在预测个人表现方面,ISFC 矩阵的表现再次优于 FC 矩阵。使用 ISFC 矩阵,我们的准确率达到了 93.5%,F1 分数为 0.94;使用 FC 矩阵,我们的准确率达到了 90%,F1 分数为 0.91。
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Explainable deep-learning framework: decoding brain states and prediction of individual performance in false-belief task at early childhood stage
Decoding of cognitive states aims to identify individuals' brain states and brain fingerprints to predict behavior. Deep learning provides an important platform for analyzing brain signals at different developmental stages to understand brain dynamics. Due to their internal architecture and feature extraction techniques, existing machine-learning and deep-learning approaches are suffering from low classification performance and explainability issues that must be improved. In the current study, we hypothesized that even at the early childhood stage (as early as 3-years), connectivity between brain regions could decode brain states and predict behavioral performance in false-belief tasks. To this end, we proposed an explainable deep learning framework to decode brain states (Theory of Mind and Pain states) and predict individual performance on ToM-related false-belief tasks in a developmental dataset. We proposed an explainable spatiotemporal connectivity-based Graph Convolutional Neural Network (Ex-stGCNN) model for decoding brain states. Here, we consider a developmental dataset, N = 155 (122 children; 3–12 yrs and 33 adults; 18–39 yrs), in which participants watched a short, soundless animated movie, shown to activate Theory-of-Mind (ToM) and pain networs. After scanning, the participants underwent a ToM-related false-belief task, leading to categorization into the pass, fail, and inconsistent groups based on performance. We trained our proposed model using Functional Connectivity (FC) and Inter-Subject Functional Correlations (ISFC) matrices separately. We observed that the stimulus-driven feature set (ISFC) could capture ToM and Pain brain states more accurately with an average accuracy of 94%, whereas it achieved 85% accuracy using FC matrices. We also validated our results using five-fold cross-validation and achieved an average accuracy of 92%. Besides this study, we applied the SHapley Additive exPlanations (SHAP) approach to identify brain fingerprints that contributed the most to predictions. We hypothesized that ToM network brain connectivity could predict individual performance on false-belief tasks. We proposed an Explainable Convolutional Variational Auto-Encoder (Ex-Convolutional VAE) model to predict individual performance on false-belief tasks and trained the model using FC and ISFC matrices separately. ISFC matrices again outperformed the FC matrices in prediction of individual performance. We achieved 93.5% accuracy with an F1-score of 0.94 using ISFC matrices and achieved 90% accuracy with an F1-score of 0.91 using FC matrices.
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来源期刊
Frontiers in Neuroinformatics
Frontiers in Neuroinformatics MATHEMATICAL & COMPUTATIONAL BIOLOGY-NEUROSCIENCES
CiteScore
4.80
自引率
5.70%
发文量
132
审稿时长
14 weeks
期刊介绍: Frontiers in Neuroinformatics publishes rigorously peer-reviewed research on the development and implementation of numerical/computational models and analytical tools used to share, integrate and analyze experimental data and advance theories of the nervous system functions. Specialty Chief Editors Jan G. Bjaalie at the University of Oslo and Sean L. Hill at the École Polytechnique Fédérale de Lausanne are supported by an outstanding Editorial Board of international experts. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics and the public worldwide. Neuroscience is being propelled into the information age as the volume of information explodes, demanding organization and synthesis. Novel synthesis approaches are opening up a new dimension for the exploration of the components of brain elements and systems and the vast number of variables that underlie their functions. Neural data is highly heterogeneous with complex inter-relations across multiple levels, driving the need for innovative organizing and synthesizing approaches from genes to cognition, and covering a range of species and disease states. Frontiers in Neuroinformatics therefore welcomes submissions on existing neuroscience databases, development of data and knowledge bases for all levels of neuroscience, applications and technologies that can facilitate data sharing (interoperability, formats, terminologies, and ontologies), and novel tools for data acquisition, analyses, visualization, and dissemination of nervous system data. Our journal welcomes submissions on new tools (software and hardware) that support brain modeling, and the merging of neuroscience databases with brain models used for simulation and visualization.
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