利用集合重权重和电位对比,根据实验数据优化力场。

IF 2.8 2区 化学 Q3 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry B Pub Date : 2024-07-05 DOI:10.1021/acs.jpcb.4c02147
Xinqiang Ding*, 
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引用次数: 0

摘要

尽管力场在过去几十年中不断改进,但我们仍然会遇到由于力场不准确而导致模拟结果与实验结果不一致的情况。这种情况为改进力场提供了机会。在本研究中,我们介绍了一种利用实验数据优化力场的新型框架。该框架的独特之处在于,它旨在优化力场,使其与实验相匹配,同时尽量减少对原始力场的扰动。为实现这一目标,我们将集合重权技术与电位对比法相结合。集合重新加权用于重新加权使用现有力场生成的构象集合,使其与实验数据相匹配,同时尽量减少对原始集合的扰动。然后利用势能对比法优化力场参数,以重现重新加权后的构象群。我们利用回转半径实验数据优化了内在无序蛋白质的粗粒度力场,证明了该框架的有效性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Optimizing Force Fields with Experimental Data Using Ensemble Reweighting and Potential Contrasting

Despite force field improvements over the past decades, we still encounter situations where simulation results disagree with experiments due to force field inaccuracies. Such situations provide opportunities to improve force fields. In this study, we introduce a novel framework for optimizing force fields using experimental data. The unique feature of this framework is that it aims to optimize force fields to match experiments while minimizing the perturbation made to the original force field. To achieve this, we combine ensemble reweighting techniques with the potential contrasting method. Ensemble reweighting is used to reweight an ensemble of conformations generated using an existing force field to match experimental data while minimizing the perturbation to the original ensemble. Potential contrasting is then utilized to optimize force field parameters to reproduce the reweighted ensemble. We demonstrate the framework’s effectiveness by optimizing a coarse-grained force field for intrinsically disordered proteins using experimental radius of gyration data.

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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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