从 H2O 中的氢键 J 耦合揭示蔗糖难以捉摸的构象:核磁共振与量子力学的结合研究。

IF 1.9 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Magnetic Resonance in Chemistry Pub Date : 2024-07-09 DOI:10.1002/mrc.5473
Jeahoo Kwon, Hannah L. Reeves, Lee-Ping Wang, Darón I. Freedberg
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引用次数: 0

摘要

氢键是生物大分子的一个重要特征,但由于羟基和 H2O 之间的氢交换速度很快,要描述溶解在水溶液中的聚糖中的氢键特征具有挑战性。原则上,标量(J)耦合常数可以揭示分子中原子的相对取向。与蛋白质和核酸中通过 H 键进行 J 耦合的研究相比,目前还缺乏对溶于水的聚糖中通过 H 键进行 J 耦合的研究。在这里,我们使用蔗糖作为研究 H 键的模型系统;蔗糖由葡萄糖(Glc)和果糖(Frc)组成,其结构已被充分研究,而且很容易获得。我们应用了同相、反相-HSQC-TOCSY 方法,并通过 H2O 中 Frc-OH1-Glc-OH2 的 H 键 J 值量化了之前未曾报道的结果。Brown 和 Levy 的早期报告显示这种 H 键只有一个方向,而我们的报告结果表明可能存在涉及这些相同原子的两个方向,即 G2OH ➔ F1O 和 F1OH ➔ G2O(其中 F 和 G 分别代表 Frc 和 Glc)。计算得出的 G2OH ➔ F1O 的密度泛函理论 J 值与实验值一致。此外,我们还发现了蔗糖中另外四种可能的 H 键,它们需要不同的 phi、psi (ϕ, ψ) 扭转角。我们的结果将为了解蔗糖的分子结构及其与蛋白质的相互作用提供新的视角。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Revealing elusive conformations of sucrose from hydrogen bond J-coupling in H2O: A combined NMR and quantum mechanics study

Hydrogen bonding is a crucial feature of biomolecules, but its characterization in glycans dissolved in aqueous solutions is challenging due to rapid hydrogen exchange between hydroxyl groups and H2O. In principle, the scalar (J) coupling constant can reveal the relative orientation of the atoms in the molecule. In contrast to J-coupling through H-bonds reported in proteins and nucleic acids, research on J-coupling through H-bonds in glycans dissolved in water is lacking. Here, we use sucrose as a model system for H-bonding studies; its structure, which consists of glucose (Glc) and fructose (Frc), is well-studied, and it is readily available. We apply the in-phase, antiphase-HSQC-TOCSY and quantify previously unreported through H-bond J-values for Frc–OH1–Glc–OH2 in H2O. While earlier reports of Brown and Levy indicate this H-bond as having only a single direction, our reported findings indicate the potential presence of two involving these same atoms, namely, G2OH ➔ F1O and F1OH ➔ G2O (where F and G stand for Frc and Glc, respectively). The calculated density functional theory J-values for the G2OH ➔ F1O agree with the experimental values. Additionally, we detected four other possible H-bonds in sucrose, which require different phi, psi (ϕ, ψ) torsion angles. The ϕ, ψ values are consistent with previous predictions of du Penhoat et al. and Venable et al. Our results will provide new insights into the molecular structure of sucrose and its interactions with proteins.

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来源期刊
CiteScore
4.70
自引率
10.00%
发文量
99
审稿时长
1 months
期刊介绍: MRC is devoted to the rapid publication of papers which are concerned with the development of magnetic resonance techniques, or in which the application of such techniques plays a pivotal part. Contributions from scientists working in all areas of NMR, ESR and NQR are invited, and papers describing applications in all branches of chemistry, structural biology and materials chemistry are published. The journal is of particular interest not only to scientists working in academic research, but also those working in commercial organisations who need to keep up-to-date with the latest practical applications of magnetic resonance techniques.
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