{"title":"通过信号级联传感细胞外浓度的局限性","authors":"Swoyam Srirupa Biswal and Vaibhav Wasnik","doi":"10.1088/1742-5468/ad5436","DOIUrl":null,"url":null,"abstract":"Signaling cascades refer to sequential biochemical reactions that occur in the cytoplasm of living cells in response to the binding of a ligand to a cell surface receptor, triggering a cellular response. Living cells need to sense extracellular concentrations with high precision. In this paper, we study the limitations of extracellular concentration measurement in linear signaling cascades. We find that as long as the cascade is linear and measurement times are much larger or much smaller than the timescales of the cytoplasmic reactions, the error in concentration measurement is independent of cascade length, the nature of the reactions and their rates. Our results can also be extended to generic non-linear signal cascades when the measurement time is much smaller than the timescales of cytoplasmic reactions. We illustrate this by considering the specific example of the accuracy of concentration detection in E. coli.","PeriodicalId":17207,"journal":{"name":"Journal of Statistical Mechanics: Theory and Experiment","volume":"17 1","pages":""},"PeriodicalIF":2.2000,"publicationDate":"2024-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Limitations to extracellular concentration sensing through signaling cascades\",\"authors\":\"Swoyam Srirupa Biswal and Vaibhav Wasnik\",\"doi\":\"10.1088/1742-5468/ad5436\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Signaling cascades refer to sequential biochemical reactions that occur in the cytoplasm of living cells in response to the binding of a ligand to a cell surface receptor, triggering a cellular response. Living cells need to sense extracellular concentrations with high precision. In this paper, we study the limitations of extracellular concentration measurement in linear signaling cascades. We find that as long as the cascade is linear and measurement times are much larger or much smaller than the timescales of the cytoplasmic reactions, the error in concentration measurement is independent of cascade length, the nature of the reactions and their rates. Our results can also be extended to generic non-linear signal cascades when the measurement time is much smaller than the timescales of cytoplasmic reactions. We illustrate this by considering the specific example of the accuracy of concentration detection in E. coli.\",\"PeriodicalId\":17207,\"journal\":{\"name\":\"Journal of Statistical Mechanics: Theory and Experiment\",\"volume\":\"17 1\",\"pages\":\"\"},\"PeriodicalIF\":2.2000,\"publicationDate\":\"2024-07-09\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Statistical Mechanics: Theory and Experiment\",\"FirstCategoryId\":\"101\",\"ListUrlMain\":\"https://doi.org/10.1088/1742-5468/ad5436\",\"RegionNum\":3,\"RegionCategory\":\"物理与天体物理\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MECHANICS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Statistical Mechanics: Theory and Experiment","FirstCategoryId":"101","ListUrlMain":"https://doi.org/10.1088/1742-5468/ad5436","RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MECHANICS","Score":null,"Total":0}
Limitations to extracellular concentration sensing through signaling cascades
Signaling cascades refer to sequential biochemical reactions that occur in the cytoplasm of living cells in response to the binding of a ligand to a cell surface receptor, triggering a cellular response. Living cells need to sense extracellular concentrations with high precision. In this paper, we study the limitations of extracellular concentration measurement in linear signaling cascades. We find that as long as the cascade is linear and measurement times are much larger or much smaller than the timescales of the cytoplasmic reactions, the error in concentration measurement is independent of cascade length, the nature of the reactions and their rates. Our results can also be extended to generic non-linear signal cascades when the measurement time is much smaller than the timescales of cytoplasmic reactions. We illustrate this by considering the specific example of the accuracy of concentration detection in E. coli.
期刊介绍:
JSTAT is targeted to a broad community interested in different aspects of statistical physics, which are roughly defined by the fields represented in the conferences called ''Statistical Physics''. Submissions from experimentalists working on all the topics which have some ''connection to statistical physics are also strongly encouraged.
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1. Quantum statistical physics, condensed matter, integrable systems
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3. Disordered systems, classical and quantum
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