Nils Marquardt, Tobias Hengsbach, Marco Mauritz, Benedikt Wirth, Klaus Schäfers
{"title":"全身正电子发射断层扫描中放射性标记细胞的运动模拟","authors":"Nils Marquardt, Tobias Hengsbach, Marco Mauritz, Benedikt Wirth, Klaus Schäfers","doi":"arxiv-2407.07709","DOIUrl":null,"url":null,"abstract":"Cell tracking is a subject of active research gathering great interest in\nmedicine and biology. Positron emission tomography (PET) is well suited for\ntracking radio-labeled cells in vivo due to its exceptional sensitivity and\nwhole-body capability. For validation, ground-truth data is desirable that\nrealistically mimics the flow of cells in a clinical situation. This study\ndevelops a workflow (CeFloPS) for simulating moving radio-labeled cells in a\nhuman phantom. From the XCAT phantom, the blood vessels are reduced to nodal\nnetworks along which cells can move and distribute to organs and tissues. The\nmovement is directed by the blood flow which is calculated in each node using\nthe Hagen-Poiseuille equation and Kirchhoffs laws assuming laminar flow. Organs\nare voxelized and movement of cells from artery entry to vein exit is generated\nvia a biased 3D random walk. The probabilities of whether cells move or stay in\ntissues are derived from rate constants of physiologically based compartment\nmodeling. PET listmode data is generated using the Monte-Carlo simulation\nframework GATE based on the definition of a large-body PET scanner with cell\npaths as moving radioactive sources and the XCAT phantom providing attenuation\ndata. From the flow simulation of 10000 cells, 100 sample cells were further\nprocessed by GATE and listmode data was reconstructed into images for\ncomparison. As demonstrated by comparisons of simulated and reconstructed cell\ndistributions, CeFloPS can realistically simulate the cell behavior of\nwhole-body PET providing valuable data for development and validation of cell\ntracking algorithms.","PeriodicalId":501378,"journal":{"name":"arXiv - PHYS - Medical Physics","volume":"39 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-07-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Motion simulation of radio-labeled cells in whole-body positron emission tomography\",\"authors\":\"Nils Marquardt, Tobias Hengsbach, Marco Mauritz, Benedikt Wirth, Klaus Schäfers\",\"doi\":\"arxiv-2407.07709\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Cell tracking is a subject of active research gathering great interest in\\nmedicine and biology. Positron emission tomography (PET) is well suited for\\ntracking radio-labeled cells in vivo due to its exceptional sensitivity and\\nwhole-body capability. For validation, ground-truth data is desirable that\\nrealistically mimics the flow of cells in a clinical situation. This study\\ndevelops a workflow (CeFloPS) for simulating moving radio-labeled cells in a\\nhuman phantom. From the XCAT phantom, the blood vessels are reduced to nodal\\nnetworks along which cells can move and distribute to organs and tissues. The\\nmovement is directed by the blood flow which is calculated in each node using\\nthe Hagen-Poiseuille equation and Kirchhoffs laws assuming laminar flow. Organs\\nare voxelized and movement of cells from artery entry to vein exit is generated\\nvia a biased 3D random walk. The probabilities of whether cells move or stay in\\ntissues are derived from rate constants of physiologically based compartment\\nmodeling. PET listmode data is generated using the Monte-Carlo simulation\\nframework GATE based on the definition of a large-body PET scanner with cell\\npaths as moving radioactive sources and the XCAT phantom providing attenuation\\ndata. From the flow simulation of 10000 cells, 100 sample cells were further\\nprocessed by GATE and listmode data was reconstructed into images for\\ncomparison. As demonstrated by comparisons of simulated and reconstructed cell\\ndistributions, CeFloPS can realistically simulate the cell behavior of\\nwhole-body PET providing valuable data for development and validation of cell\\ntracking algorithms.\",\"PeriodicalId\":501378,\"journal\":{\"name\":\"arXiv - PHYS - Medical Physics\",\"volume\":\"39 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-07-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - PHYS - Medical Physics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2407.07709\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - PHYS - Medical Physics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2407.07709","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
细胞追踪是医学和生物学领域的一个热门研究课题。正电子发射断层扫描(PET)具有极高的灵敏度和全身追踪能力,非常适合在体内追踪放射性标记的细胞。为了进行验证,我们需要能真实模拟临床情况下细胞流动的地面实况数据。本研究开发了一种工作流程(CeFloPS),用于模拟人体模型中移动的放射性标记细胞。在 XCAT 模型中,血管被简化为节点网络,细胞可以沿着节点网络移动并分布到器官和组织中。移动由血流引导,每个节点的血流都是通过哈根-普瓦耶方程和假设层流的基尔霍夫定律计算得出的。器官是体素化的,细胞从动脉入口到静脉出口的运动是通过有偏差的三维随机行走产生的。细胞在组织内移动或停留的概率来自基于生理学的隔室模型的速率常数。PET 列表模式数据使用蒙特卡罗模拟框架 GATE 生成,该框架基于大体 PET 扫描仪的定义,细胞路径是移动放射源,XCAT 模型提供衰减数据。从 10000 个细胞的流动模拟中,GATE 进一步处理了 100 个样本细胞,并将列表模式数据重建为图像以供比较。通过比较模拟和重建的细胞分布,CeFloPS 可以真实地模拟全身 PET 的细胞行为,为开发和验证细胞追踪算法提供了宝贵的数据。
Motion simulation of radio-labeled cells in whole-body positron emission tomography
Cell tracking is a subject of active research gathering great interest in
medicine and biology. Positron emission tomography (PET) is well suited for
tracking radio-labeled cells in vivo due to its exceptional sensitivity and
whole-body capability. For validation, ground-truth data is desirable that
realistically mimics the flow of cells in a clinical situation. This study
develops a workflow (CeFloPS) for simulating moving radio-labeled cells in a
human phantom. From the XCAT phantom, the blood vessels are reduced to nodal
networks along which cells can move and distribute to organs and tissues. The
movement is directed by the blood flow which is calculated in each node using
the Hagen-Poiseuille equation and Kirchhoffs laws assuming laminar flow. Organs
are voxelized and movement of cells from artery entry to vein exit is generated
via a biased 3D random walk. The probabilities of whether cells move or stay in
tissues are derived from rate constants of physiologically based compartment
modeling. PET listmode data is generated using the Monte-Carlo simulation
framework GATE based on the definition of a large-body PET scanner with cell
paths as moving radioactive sources and the XCAT phantom providing attenuation
data. From the flow simulation of 10000 cells, 100 sample cells were further
processed by GATE and listmode data was reconstructed into images for
comparison. As demonstrated by comparisons of simulated and reconstructed cell
distributions, CeFloPS can realistically simulate the cell behavior of
whole-body PET providing valuable data for development and validation of cell
tracking algorithms.