vortex-p:用于粒子模拟的亥姆霍兹-霍奇和雷诺分解算法

IF 7.2 2区 物理与天体物理 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Computer Physics Communications Pub Date : 2024-07-04 DOI:10.1016/j.cpc.2024.109305
David Vallés-Pérez , Susana Planelles , Vicent Quilis , Frederick Groth , Tirso Marin-Gilabert , Klaus Dolag
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引用次数: 0

摘要

天体物理湍流具有内在的多尺度性质,因此对其进行数值模拟以及随后对模拟数据进行分析是一个复杂的问题。特别是,研究湍流速度场的两个基本步骤是亥姆霍兹-霍奇分解(压缩+索状;HHD)和雷诺分解(体积+湍流;RD)。对于均匀采样的数据,如欧拉固定网格模拟产生的数据,这些问题的数值计算相对简单;但对于非均匀采样的数据,如粒子模拟或无网格模拟产生的数据,这些问题的计算就明显复杂得多。在本文中,我们描述、实现并测试了 vortex-p,这是一个从涡旋代码发展而来的公开工具,用于对基于粒子的模拟(来自平滑粒子流体力学(SPH)、移动网格或无网格代码)的速度场进行上述两种分解。该算法依赖于创建一个自适应网格细化(AMR)的临时网格集,在该网格集上表示输入速度场。然后,通过椭圆求解器解决 HHD 问题,而对于 RD,我们采用了迭代多尺度滤波器。我们进行了一系列理想化测试,以评估代码的准确性、收敛性和扩展性。最后,我们介绍了代码在使用 OpenGadget3 进行的各种星系团 SPH 和无网格有限质量(MFM)模拟中的一些应用,这些模拟具有不同的分辨率和物理特性,以展示代码的能力。
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vortex-p: A Helmholtz-Hodge and Reynolds decomposition algorithm for particle-based simulations

Astrophysical turbulent flows display an intrinsically multi-scale nature, making their numerical simulation and the subsequent analyses of simulated data a complex problem. In particular, two fundamental steps in the study of turbulent velocity fields are the Helmholtz-Hodge decomposition (compressive+solenoidal; HHD) and the Reynolds decomposition (bulk+turbulent; RD). These problems are relatively simple to perform numerically for uniformly-sampled data, such as the one emerging from Eulerian, fix-grid simulations; but their computation is remarkably more complex in the case of non-uniformly sampled data, such as the one stemming from particle-based or meshless simulations. In this paper, we describe, implement and test vortex-p, a publicly available tool evolved from the vortex code, to perform both these decompositions upon the velocity fields of particle-based simulations, either from smoothed particle hydrodynamics (SPH), moving-mesh or meshless codes. The algorithm relies on the creation of an ad-hoc adaptive mesh refinement (AMR) set of grids, on which the input velocity field is represented. HHD is then addressed by means of elliptic solvers, while for the RD we adapt an iterative, multi-scale filter. We perform a series of idealised tests to assess the accuracy, convergence and scaling of the code. Finally, we present some applications of the code to various SPH and meshless finite-mass (MFM) simulations of galaxy clusters performed with OpenGadget3, with different resolutions and physics, to showcase the capabilities of the code.

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来源期刊
Computer Physics Communications
Computer Physics Communications 物理-计算机:跨学科应用
CiteScore
12.10
自引率
3.20%
发文量
287
审稿时长
5.3 months
期刊介绍: The focus of CPC is on contemporary computational methods and techniques and their implementation, the effectiveness of which will normally be evidenced by the author(s) within the context of a substantive problem in physics. Within this setting CPC publishes two types of paper. Computer Programs in Physics (CPiP) These papers describe significant computer programs to be archived in the CPC Program Library which is held in the Mendeley Data repository. The submitted software must be covered by an approved open source licence. Papers and associated computer programs that address a problem of contemporary interest in physics that cannot be solved by current software are particularly encouraged. Computational Physics Papers (CP) These are research papers in, but are not limited to, the following themes across computational physics and related disciplines. mathematical and numerical methods and algorithms; computational models including those associated with the design, control and analysis of experiments; and algebraic computation. Each will normally include software implementation and performance details. The software implementation should, ideally, be available via GitHub, Zenodo or an institutional repository.In addition, research papers on the impact of advanced computer architecture and special purpose computers on computing in the physical sciences and software topics related to, and of importance in, the physical sciences may be considered.
期刊最新文献
An improved version of PyWolf with multithread-based parallelism support A new way to use nonlocal symmetries to determine first integrals of second-order nonlinear ordinary differential equations An algorithm for the incorporation of relevant FVM boundary conditions in the Eulerian SPH framework On-the-fly clustering for exascale molecular dynamics simulations Implementation of magnetic compressional effects at arbitrary wavelength in the global version of GENE
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