David Vallés-Pérez , Susana Planelles , Vicent Quilis , Frederick Groth , Tirso Marin-Gilabert , Klaus Dolag
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In this paper, we describe, implement and test <span>vortex-p</span>, a publicly available tool evolved from the <span>vortex</span> code, to perform both these decompositions upon the velocity fields of particle-based simulations, either from smoothed particle hydrodynamics (SPH), moving-mesh or meshless codes. The algorithm relies on the creation of an ad-hoc adaptive mesh refinement (AMR) set of grids, on which the input velocity field is represented. HHD is then addressed by means of elliptic solvers, while for the RD we adapt an iterative, multi-scale filter. We perform a series of idealised tests to assess the accuracy, convergence and scaling of the code. Finally, we present some applications of the code to various SPH and meshless finite-mass (MFM) simulations of galaxy clusters performed with <span>OpenGadget3</span>, with different resolutions and physics, to showcase the capabilities of the code.</p></div>","PeriodicalId":285,"journal":{"name":"Computer Physics Communications","volume":"304 ","pages":"Article 109305"},"PeriodicalIF":7.2000,"publicationDate":"2024-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0010465524002285/pdfft?md5=c598207a6435a4989865b3be3b66e73f&pid=1-s2.0-S0010465524002285-main.pdf","citationCount":"0","resultStr":"{\"title\":\"vortex-p: A Helmholtz-Hodge and Reynolds decomposition algorithm for particle-based simulations\",\"authors\":\"David Vallés-Pérez , Susana Planelles , Vicent Quilis , Frederick Groth , Tirso Marin-Gilabert , Klaus Dolag\",\"doi\":\"10.1016/j.cpc.2024.109305\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Astrophysical turbulent flows display an intrinsically multi-scale nature, making their numerical simulation and the subsequent analyses of simulated data a complex problem. In particular, two fundamental steps in the study of turbulent velocity fields are the Helmholtz-Hodge decomposition (compressive+solenoidal; HHD) and the Reynolds decomposition (bulk+turbulent; RD). These problems are relatively simple to perform numerically for uniformly-sampled data, such as the one emerging from Eulerian, fix-grid simulations; but their computation is remarkably more complex in the case of non-uniformly sampled data, such as the one stemming from particle-based or meshless simulations. In this paper, we describe, implement and test <span>vortex-p</span>, a publicly available tool evolved from the <span>vortex</span> code, to perform both these decompositions upon the velocity fields of particle-based simulations, either from smoothed particle hydrodynamics (SPH), moving-mesh or meshless codes. The algorithm relies on the creation of an ad-hoc adaptive mesh refinement (AMR) set of grids, on which the input velocity field is represented. HHD is then addressed by means of elliptic solvers, while for the RD we adapt an iterative, multi-scale filter. We perform a series of idealised tests to assess the accuracy, convergence and scaling of the code. Finally, we present some applications of the code to various SPH and meshless finite-mass (MFM) simulations of galaxy clusters performed with <span>OpenGadget3</span>, with different resolutions and physics, to showcase the capabilities of the code.</p></div>\",\"PeriodicalId\":285,\"journal\":{\"name\":\"Computer Physics Communications\",\"volume\":\"304 \",\"pages\":\"Article 109305\"},\"PeriodicalIF\":7.2000,\"publicationDate\":\"2024-07-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S0010465524002285/pdfft?md5=c598207a6435a4989865b3be3b66e73f&pid=1-s2.0-S0010465524002285-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computer Physics Communications\",\"FirstCategoryId\":\"101\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0010465524002285\",\"RegionNum\":2,\"RegionCategory\":\"物理与天体物理\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer Physics Communications","FirstCategoryId":"101","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0010465524002285","RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
vortex-p: A Helmholtz-Hodge and Reynolds decomposition algorithm for particle-based simulations
Astrophysical turbulent flows display an intrinsically multi-scale nature, making their numerical simulation and the subsequent analyses of simulated data a complex problem. In particular, two fundamental steps in the study of turbulent velocity fields are the Helmholtz-Hodge decomposition (compressive+solenoidal; HHD) and the Reynolds decomposition (bulk+turbulent; RD). These problems are relatively simple to perform numerically for uniformly-sampled data, such as the one emerging from Eulerian, fix-grid simulations; but their computation is remarkably more complex in the case of non-uniformly sampled data, such as the one stemming from particle-based or meshless simulations. In this paper, we describe, implement and test vortex-p, a publicly available tool evolved from the vortex code, to perform both these decompositions upon the velocity fields of particle-based simulations, either from smoothed particle hydrodynamics (SPH), moving-mesh or meshless codes. The algorithm relies on the creation of an ad-hoc adaptive mesh refinement (AMR) set of grids, on which the input velocity field is represented. HHD is then addressed by means of elliptic solvers, while for the RD we adapt an iterative, multi-scale filter. We perform a series of idealised tests to assess the accuracy, convergence and scaling of the code. Finally, we present some applications of the code to various SPH and meshless finite-mass (MFM) simulations of galaxy clusters performed with OpenGadget3, with different resolutions and physics, to showcase the capabilities of the code.
期刊介绍:
The focus of CPC is on contemporary computational methods and techniques and their implementation, the effectiveness of which will normally be evidenced by the author(s) within the context of a substantive problem in physics. Within this setting CPC publishes two types of paper.
Computer Programs in Physics (CPiP)
These papers describe significant computer programs to be archived in the CPC Program Library which is held in the Mendeley Data repository. The submitted software must be covered by an approved open source licence. Papers and associated computer programs that address a problem of contemporary interest in physics that cannot be solved by current software are particularly encouraged.
Computational Physics Papers (CP)
These are research papers in, but are not limited to, the following themes across computational physics and related disciplines.
mathematical and numerical methods and algorithms;
computational models including those associated with the design, control and analysis of experiments; and
algebraic computation.
Each will normally include software implementation and performance details. The software implementation should, ideally, be available via GitHub, Zenodo or an institutional repository.In addition, research papers on the impact of advanced computer architecture and special purpose computers on computing in the physical sciences and software topics related to, and of importance in, the physical sciences may be considered.