Rumei Li , Zhaoxi Li , Wanrong Luo , Xiaotong Zhu , Baoming Luo
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Furthermore, we observed upregulation of the mTOR signaling pathway, which correlated positively with the expression of senescence-associated genes. This suggests a potential regulatory role for mTOR in the senescence of HCC. Strikingly, patients with elevated expression of senescence markers, including <em>p16</em><sup><em>INK4A</em></sup>, <em>p21</em>, and <em>GLB1</em>, demonstrated significantly reduced overall survival rates. Our findings indicate that immunosenescence in unconventional T cells may play a role in HCC progression. 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引用次数: 0
摘要
衰老细胞的积累是肝细胞癌(HCC)的一个公认特征,但其具体类型和对预后的影响仍有待研究。本研究旨在利用公开的大量和单细胞 mRNA 测序数据,划分 HCC 中的衰老细胞类型及其衰老模式。通过基因表达和基因组富集分析,我们在 HCC 样本中发现了不同的衰老模式。值得注意的是,我们发现非常规 T 细胞,特别是自然杀伤 T 细胞和 γδT 细胞是主要的衰老细胞类型。这些细胞表现出丰富的 DNA 损伤、衰老和淋巴细胞活化负调控相关通路。此外,我们还观察到 mTOR 信号通路的上调,这与衰老相关基因的表达呈正相关。这表明 mTOR 在 HCC 的衰老过程中起着潜在的调控作用。引人注目的是,衰老标志物(包括 p16INK4A、p21 和 GLB1)表达升高的患者总生存率显著降低。我们的研究结果表明,非常规 T 细胞的免疫衰老可能在 HCC 的发展过程中起到了一定的作用。针对 mTOR 通路或消除衰老的非常规 T 细胞的潜在治疗意义值得进一步探讨,以改善 HCC 患者的预后。
Identification of immunosenescence of unconventional T cells in hepatocellular carcinoma
Accumulation of senescent cells is a recognized feature in hepatocellular carcinoma (HCC), but their specific types and prognostic implications remain under investigation. This study aimed to delineate senescent cell types and their senescent patterns in HCC using publicly available bulk and single-cell mRNA sequencing data. Through gene expression and gene set enrichment analysis, we identified distinct senescent patterns within HCC samples. Notably, unconventional T cells, specifically natural killer T cells and γδT cells, were found to be the predominant senescent cell types. These cells exhibited enriched pathways related to DNA damage, senescence and the negative regulation of lymphocyte activation. Furthermore, we observed upregulation of the mTOR signaling pathway, which correlated positively with the expression of senescence-associated genes. This suggests a potential regulatory role for mTOR in the senescence of HCC. Strikingly, patients with elevated expression of senescence markers, including p16INK4A, p21, and GLB1, demonstrated significantly reduced overall survival rates. Our findings indicate that immunosenescence in unconventional T cells may play a role in HCC progression. The potential therapeutic implications of targeting the mTOR pathway or eliminating senescent unconventional T cells warrant further exploration to improve HCC patient outcomes.
期刊介绍:
Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered.
Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered.
Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.