利用环境协变量预测和绘制桉树克隆的生产力图谱

IF 1.9 3区 生物学 Q2 FORESTRY Tree Genetics & Genomes Pub Date : 2024-07-13 DOI:10.1007/s11295-024-01656-8
Leonardo Oliveira Silva da Costa, Izabel Christina Gava de Souza, Aline Cristina Miranda Fernandes, Aurélio Mendes Aguiar, Flávia Maria Avelar Gonçalves, Evandro Novaes
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引用次数: 0

摘要

木材生产的定量性质给育种人员带来了挑战。基因型与环境之间复杂的相互作用(G×E)使得品种推荐变得困难。我们的目标是利用环境协变量建立 G×E 相互作用模型,并基于地理信息系统(GIS)绘制巴西重要种植区的商业桉树克隆适应性地图。为此,研究人员利用了一个包含 13,483 个林分的生产力数据集,其中有 6 个商业克隆。利用 WorldClim 和 SoilGrids 数据库中的数据,采用偏最小二乘法回归法建立了地理、土壤和气候协变量对克隆产量的影响模型。利用每个克隆的模型,生成了空间分辨率约为 5 平方公里的产量图。然后,通过逐像素比较各克隆的预测产量值,推荐栽培品种。对克隆表现影响最大的协变量是年降雨量、最干旱月份的降雨量、最干旱季度的降雨量、最炎热月份的最高气温和最潮湿季度的平均气温。因此,基于环境协变量的 G×E 模型与地理信息系统相结合,可通过绘制基因型在每个地点的适应性图谱,大大提高栽培品种推荐的分辨率。
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Prediction and mapping the productivity of eucalyptus clones with environmental covariates

The quantitative nature of wood production poses a challenge for breeders. The complex interaction of genotypes with environments (G×E) makes cultivars recommendation difficult. Our objective was to model the G×E interaction using environmental covariates and map the adaptability of commercial Eucalyptus clones based on a geographic information system (GIS) across important plantation regions in Brazil. To achieve this, a productivity dataset with 13,483 stands of six commercial clones was utilized. The effects of geography, soil and climate covariates on clone yield were modeled using partial least squares regression, with data from WorldClim and SoilGrids databases. Using the models for each clone, yield maps were generated at a spatial resolution of approximately 5 km². Then, cultivar recommendation was made through a pixel-by-pixel comparison of predicted yield values among the clones. The covariates that most affected the performance of the clones were annual rainfall, rainfall of the driest month, rainfall of the driest quarter, maximum temperature of the hottest month and average temperature of the wettest quarter. Thus, G×E modeling based on environmental covariates combined with GIS enables a large increase in the resolution of cultivar recommendations by mapping the adaptability of genotypes in each site.

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来源期刊
Tree Genetics & Genomes
Tree Genetics & Genomes 生物-林学
CiteScore
4.40
自引率
4.20%
发文量
38
审稿时长
2 months
期刊介绍: Tree Genetics and Genomes is an international, peer-reviewed journal, which provides for the rapid publication of high quality papers covering the areas of forest and horticultural tree genetics and genomics. Topics covered in this journal include: Structural, functional and comparative genomics Evolutionary, population and quantitative genetics Ecological and physiological genetics Molecular, cellular and developmental genetics Conservation and restoration genetics Breeding and germplasm development Bioinformatics and databases Tree Genetics and Genomes publishes four types of papers: (1) Original Paper (2) Review (3) Opinion Paper (4) Short Communication.
期刊最新文献
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