基于有丝分裂体 COI 基因序列的 26 个蛾类物种的分子鉴定

Sijad Islam, Ibnul Saad Sakal, M. S. Abedin, A. Ghosh, F. S. Borsha, Md Khayrul Hasan, Md Abdullah Al Mamun, Akter Akter, Surma Mohiudden Meem, Md Monwar Hossain
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摘要

线粒体基因--细胞色素 c 氧化酶亚单位 I(COI)被广泛用于蛾类物种的分子鉴定,既可靠又省时。本研究从孟加拉国不同地区共采集了 26 种飞蛾,并对其 COI 基因进行了测序。随后,在 NCBI 的 GenBank 中对这些物种进行了同源性检索,发现除了 Fodina oriolus 和 Micronia aculeata 外,其他物种在不同的原产国都有显著的相似性。我们随后将所有 COI 基因序列提交到 Genbank,但 F. oriolus 和 M. aculeata 这两个序列除外,这两个序列是首次提交到 Genbank 数据库。然后,我们使用 BioEdit 和 MEGA10 鉴定了一个 582 bp 的 COI 基因片段,其中包括 353 个保守位点、229 个可变位点和 180 个解析信息位点。分析结果显示,平均核苷酸组成分别为 29.04% A、41.06% T、14.43% G 和 15.46% C。其中,A+T(70.10%)大于 G+C(29.90%)。另一方面,木村 2 参数算法计算了 26 个蛾类物种之间的遗传距离,结果显示差异在 0.051% 到 0.197% 之间。由于种间差异水平较低(0.051% 至 0.197%),这一结果显示了种间杂交的证据。不过,DNA 条形码数据集可作为识别蛾类物种和建立孟加拉国及其邻国蛾类害虫综合条形码参考库的基础。此外,它还支持害虫综合防治工作,并有助于开展更大规模的生态研究。52(1):67-79, 2024
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Molecular identification of twenty-six moth species based on mitichondrial COI gene sequences
The widespread use of the mitochondrial gene, Cytochrome c oxidase subunit I (COI), for molecular identification of moth species is both reliable and time-efficient. In the present study, a total of 26 moths from various regions of Bangladesh were collected, and their COI gene was sequenced. Subsequently, homology searches of these species at NCBI’s GenBank revealed significant similarity across diverse countries of origin except for, Fodina oriolus and Micronia aculeata. We then submitted all COI gene sequences to Genbank, with the exception of two sequences, F. oriolus and M. aculeata, which marked the first submission in the Genbank database. We then used BioEdit and MEGA10 to identify a 582 bp COI gene fragment, which included 353 conserved sites, 229 variable sites, and 180 parsimony-informative sites. In the analysis, the average nucleotide composition showed 29.04% A, 41.06% T, 14.43% G, and 15.46% C, respectively. The value of A+T (70.10%) was greater than G+C (29.90%). On the other hand, the Kimura 2-Parameter algorithm calculated the genetic distances between the 26 moth species, revealing variations ranging from 0.051 to 0.197%. This result showed evidence of interspecies hybridization due to the low levels of interspecies divergence (0.051 to 0.197%). However, the DNA barcode dataset serves as a foundation for identifying moth species and establishing a comprehensive barcode reference library for moth pests in Bangladesh and neighbouring countries. Additionally, it supports integrated pest control efforts and contributes to larger ecological studies. Bangladesh J. Zool. 52(1): 67-79, 2024                                                                                                                
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