为多中心组织病理学图像分类学习可通用的人工智能模型。

IF 6.8 1区 医学 Q1 ONCOLOGY NPJ Precision Oncology Pub Date : 2024-07-19 DOI:10.1038/s41698-024-00652-4
Maryam Asadi-Aghbolaghi, Amirali Darbandsari, Allen Zhang, Alberto Contreras-Sanz, Jeffrey Boschman, Pouya Ahmadvand, Martin Köbel, David Farnell, David G. Huntsman, Andrew Churg, Peter C. Black, Gang Wang, C. Blake Gilks, Hossein Farahani, Ali Bashashati
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引用次数: 0

摘要

病理学家对组织病理学切片的研究是癌症常规诊断不可或缺的组成部分。人工智能(AI)有可能提高临床病理诊断的准确性、效率和患者预后。然而,组织制备、染色方案和组织病理切片数字化方面的差异可能会导致深度学习模型在仅对一个中心的数据进行训练时过度拟合,从而突出了将深度学习网络泛化以用于多中心的必要性。有几种技术,包括使用灰度图像、颜色归一化技术和对抗性域自适应(ADA),被建议用来泛化深度学习算法,但它们的有效性和可辨别性都有局限性。卷积神经网络(CNN)对振幅频谱的变化表现出更高的灵敏度,而人类主要依靠与相位相关的成分来识别物体。因此,我们提出了基于傅立叶变换的对抗性域适应(Adversarial fourIer-based Domain Adaptation,AIDA),将傅立叶变换的优势应用于对抗性域适应。我们结合多个医疗中心的病例,对四种癌症的亚型分类任务进行了全面检查。具体来说,数据集包括 1113 个卵巢癌病例、247 个胸膜癌病例、422 个膀胱癌病例和 482 个乳腺癌病例的多中心数据。我们提出的方法大大提高了性能,在目标领域取得了优异的分类结果,超过了基线、颜色增强和归一化技术以及 ADA。此外,病理学家的广泛评论表明,我们提出的 AIDA 方法能成功识别已知的特定组织类型特征。这一优异表现凸显了 AIDA 在解决多中心组织病理学数据集深度学习模型泛化难题方面的潜力。
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Learning generalizable AI models for multi-center histopathology image classification
Investigation of histopathology slides by pathologists is an indispensable component of the routine diagnosis of cancer. Artificial intelligence (AI) has the potential to enhance diagnostic accuracy, improve efficiency, and patient outcomes in clinical pathology. However, variations in tissue preparation, staining protocols, and histopathology slide digitization could result in over-fitting of deep learning models when trained on the data from only one center, thereby underscoring the necessity to generalize deep learning networks for multi-center use. Several techniques, including the use of grayscale images, color normalization techniques, and Adversarial Domain Adaptation (ADA) have been suggested to generalize deep learning algorithms, but there are limitations to their effectiveness and discriminability. Convolutional Neural Networks (CNNs) exhibit higher sensitivity to variations in the amplitude spectrum, whereas humans predominantly rely on phase-related components for object recognition. As such, we propose Adversarial fourIer-based Domain Adaptation (AIDA) which applies the advantages of a Fourier transform in adversarial domain adaptation. We conducted a comprehensive examination of subtype classification tasks in four cancers, incorporating cases from multiple medical centers. Specifically, the datasets included multi-center data for 1113 ovarian cancer cases, 247 pleural cancer cases, 422 bladder cancer cases, and 482 breast cancer cases. Our proposed approach significantly improved performance, achieving superior classification results in the target domain, surpassing the baseline, color augmentation and normalization techniques, and ADA. Furthermore, extensive pathologist reviews suggested that our proposed approach, AIDA, successfully identifies known histotype-specific features. This superior performance highlights AIDA’s potential in addressing generalization challenges in deep learning models for multi-center histopathology datasets.
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来源期刊
CiteScore
9.90
自引率
1.30%
发文量
87
审稿时长
18 weeks
期刊介绍: Online-only and open access, npj Precision Oncology is an international, peer-reviewed journal dedicated to showcasing cutting-edge scientific research in all facets of precision oncology, spanning from fundamental science to translational applications and clinical medicine.
期刊最新文献
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