遗传性淀粉样变性:对纤维蛋白原 A 变异蛋白的认识

IF 3.3 4区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Proteins-Structure Function and Bioinformatics Pub Date : 2024-12-01 Epub Date: 2024-07-19 DOI:10.1002/prot.26732
Elizabeth R Cattaneo, Romina A Gisonno, Martín C Abba, Marianela Santana, Silvana A Rosú, Elsa Nucifora, María A Aguirre, María C Giordani, M Alejandra Tricerri, Nahuel A Ramella
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引用次数: 0

摘要

淀粉样变性是一组可溶性蛋白质聚集并以纤维状形态沉积在细胞外组织中的疾病。治疗策略的有效性取决于所涉及的特定蛋白质,因此准确确定其性质至关重要。此外,在确诊后,通过寻找亲属中的突变基因可以为临床提供建议。在此,我们报告了与纤维蛋白原 Aα 链变异相关的肾淀粉样变性病的精确诊断,并探讨了结构致病性的可能原因。我们利用全外显子组测序和 GATK 调用管道来描述一名肾衰竭患者体内存在的蛋白质变体。应用生物信息学策略提出了变体聚集的潜在解释。我们的方法确定了纤维蛋白原 Aα 链的单点变异,为治愈性移植提供了可能。硅学结构分析表明,该变异体的致病性可能是由于其产生肽的敏感性增加,容易沉积为具有β片状结构的寡聚体。利用全基因组测序的全面覆盖性,我们成功地填补了遗传性淀粉样变性诊断的空白,并推动了生物医学的进步。
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Hereditary Amyloidosis: Insights Into a Fibrinogen A Variant Protein.

Amyloidosis are a group of diseases in which soluble proteins aggregate and deposit in fibrillar conformation extracellularly in tissues. The effectiveness of therapeutic strategies depends on the specific protein involved, being crucial to accurately determine its nature. Moreover, following the diagnosis, the search for the mutation within relatives allows the clinical advice. Here we report the precise diagnosis and explored the possible reasons of the structural pathogenicity for a renal amyloidosis related to a fibrinogen Aα-chain variant. Whole-exome sequencing and GATK calling pipeline were leveraged to characterize the protein variant present in a patient with kidney failure. Bioinformatics strategies were applied to suggest potential explanations of the variants aggregation. Our pipeline allowed the identification of a single-point variant of fibrinogen Aα-chain, which opened the possibility of curative transplantation. In silico structural analysis suggested that the pathogenicity of the variant may be attributed to a heightened susceptibility to yield a peptide prone to deposit as an oligomer with a β-sheet structure. Exploiting the comprehensive coverage of whole-genome sequencing, we managed to fill a vacant stage in the diagnosis of hereditary amyloidosis and to stimulate the advancement in biomedicine.

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来源期刊
Proteins-Structure Function and Bioinformatics
Proteins-Structure Function and Bioinformatics 生物-生化与分子生物学
CiteScore
5.90
自引率
3.40%
发文量
172
审稿时长
3 months
期刊介绍: PROTEINS : Structure, Function, and Bioinformatics publishes original reports of significant experimental and analytic research in all areas of protein research: structure, function, computation, genetics, and design. The journal encourages reports that present new experimental or computational approaches for interpreting and understanding data from biophysical chemistry, structural studies of proteins and macromolecular assemblies, alterations of protein structure and function engineered through techniques of molecular biology and genetics, functional analyses under physiologic conditions, as well as the interactions of proteins with receptors, nucleic acids, or other specific ligands or substrates. Research in protein and peptide biochemistry directed toward synthesizing or characterizing molecules that simulate aspects of the activity of proteins, or that act as inhibitors of protein function, is also within the scope of PROTEINS. In addition to full-length reports, short communications (usually not more than 4 printed pages) and prediction reports are welcome. Reviews are typically by invitation; authors are encouraged to submit proposed topics for consideration.
期刊最新文献
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