用综合生物信息学方法揭示银屑病病理和治疗的分子奥秘

IF 1 Q4 GENETICS & HEREDITY Gene Reports Pub Date : 2024-07-18 DOI:10.1016/j.genrep.2024.101984
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引用次数: 0

摘要

银屑病是一种慢性复发性皮肤炎症性疾病,全球约有 2-3% 的人患有这种疾病。目前的治疗策略包括针对炎症通路的缓解性疗法,但这些疗法并不能彻底治愈病变皮肤。银屑病病变皮肤中过度增殖和异常分化的角质形成细胞的分子线索仍然未知。我们通过一种综合的模拟方法,分析了来自 3 个 RNA-Seq 和 3 个微阵列数据集的人类银屑病皮肤样本,确定了 340 个差异表达基因(DEG)。此外,还利用基因本体富集、KEGG 通路和蛋白-蛋白相互作用网络分析了这些 DEGs 在疾病病理中的作用,并确定了枢纽基因。在银屑病皮炎的临床前小鼠模型中验证了中心基因的表达。最后,对这十个枢纽基因的可药用性进行了评估,结果发现针对 7 个枢纽基因(CCNA2、TOP2A、BIRC5、RRM2、CDK1、AURKA 和 CCNB1)的 74 种药物可重新用于银屑病治疗。这项研究加深了人们对银屑病病理生理学的了解,并提出了作为有效缓解银屑病的治疗靶点的关键分子生物标志物。
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An integrated bioinformatics approach for unravelling the molecular insights into psoriasis pathology and therapeutics

Psoriasis is a chronic relapsing inflammatory disease of the skin that affects almost 2–3 % population worldwide. The current treatment strategies include palliative therapeutics targeting the inflammatory pathways that do not completely cure the lesioned skin. The molecular cues in the hyper-proliferative and aberrantly differentiated keratinocytes of the psoriatic lesioned skin remain unknown. Through an integrative in-silico approach, we have analyzed human psoriatic skin samples from 3 RNA-Seq and 3 microarray datasets to identify 340 differentially expressed genes (DEGs). Further, these DEGs were analyzed using gene ontology enrichment, KEGG pathways, and protein-protein interaction networks for their role in disease pathology and the identification of hub genes. The expression of the hub genes was validated in a preclinical murine model of psoriasiform dermatitis. Finally, the ten hub genes were assessed for their drugability, which revealed 74 drugs targeting 7 hub genes (CCNA2, TOP2A, BIRC5, RRM2, CDK1, AURKA, and CCNB1) that can be repurposed for psoriasis treatment. This study provides an understanding of psoriasis pathophysiology and suggests key molecular biomarkers as therapeutic targets for effective mitigation of the disease.

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来源期刊
Gene Reports
Gene Reports Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
3.30
自引率
7.70%
发文量
246
审稿时长
49 days
期刊介绍: Gene Reports publishes papers that focus on the regulation, expression, function and evolution of genes in all biological contexts, including all prokaryotic and eukaryotic organisms, as well as viruses. Gene Reports strives to be a very diverse journal and topics in all fields will be considered for publication. Although not limited to the following, some general topics include: DNA Organization, Replication & Evolution -Focus on genomic DNA (chromosomal organization, comparative genomics, DNA replication, DNA repair, mobile DNA, mitochondrial DNA, chloroplast DNA). Expression & Function - Focus on functional RNAs (microRNAs, tRNAs, rRNAs, mRNA splicing, alternative polyadenylation) Regulation - Focus on processes that mediate gene-read out (epigenetics, chromatin, histone code, transcription, translation, protein degradation). Cell Signaling - Focus on mechanisms that control information flow into the nucleus to control gene expression (kinase and phosphatase pathways controlled by extra-cellular ligands, Wnt, Notch, TGFbeta/BMPs, FGFs, IGFs etc.) Profiling of gene expression and genetic variation - Focus on high throughput approaches (e.g., DeepSeq, ChIP-Seq, Affymetrix microarrays, proteomics) that define gene regulatory circuitry, molecular pathways and protein/protein networks. Genetics - Focus on development in model organisms (e.g., mouse, frog, fruit fly, worm), human genetic variation, population genetics, as well as agricultural and veterinary genetics. Molecular Pathology & Regenerative Medicine - Focus on the deregulation of molecular processes in human diseases and mechanisms supporting regeneration of tissues through pluripotent or multipotent stem cells.
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