IF 2.9 4区 生物学Q1 EDUCATION & EDUCATIONAL RESEARCHJournal of GeneticsPub Date : 2024-01-01
Laura L Valdez-Velazquez, Héctor Ochoa-Díaz-López, Iván Delgado-Enciso, Héctor Rangel-Villalobos, Irám P Rodríguez-Sánchez, Rosario García-Miranda, Doireyner Daniel Velázquez-Ramírez, Nancy A Reyes-Méndez, Carlos Eduardo Barajas-Saucedo, Margarita L Martínez-Fierro
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引用次数: 0
摘要
由沙眼衣原体引起的沙眼是世界上最常见的传染性失明,在恰帕斯州(墨西哥)的玛雅原住民中也有发生。患沙眼时,炎症基因会被激活,因此某些多态性会增加患上不可逆失明的易感性。本研究旨在评估玛雅人患晚期沙眼的遗传风险。在一项病例对照研究中(n = 51 对 n = 102),分析了与炎症有关的基因中的以下单核苷酸多态性(SNPs):HSD11B1(rs11807619)、HSD11B1(rs932335)、ABCG2(rs2231142)、SLCO1B1(rs4149056)、IL-10(rs1800890)、TNF(rs1800629)、MMP2(rs243865)和 ACE。有三个 SNP 与晚期沙眼风险有关:(i) rs11807619 的 T 等位基因,(ii) rs932335 的 C 等位基因,它们与 HSD11B1 基因有关(OR = 22.5-27.3),尤其是男性,如果调整性别(OR = 16-16.7);(iii) ACE 基因中 rs4340 的 D 等位基因(OR = 5.2-5.3)。事实上,ACE 基因与 HSD11B1 SNPs 之间存在明显的连锁不平衡关系(r = 0.17-0.179;P = 0.0048-0.0073)。两个 SNP HSD11B1 基因(P = 0.013 vs 0.0039)和 HSD11B1-ACE 单倍型与玛雅族晚期沙眼有关。
Association of polymorphisms of HSD11B1 and ACE genes with trachoma disease.
Trachoma, caused by Chlamydia trachomatis, is the most common infectious blindness in the world and is present in indigenous Mayan from Chiapas (Mexico). Inflammatory genes are activated when suffering from trachoma, thus some polymorphisms could increase the susceptibility to develop irreversible blindness. This study aimed to evaluate the genetic risk of developing late-stage trachoma in Mayan ethnic groups. In a case-control study (n = 51 vs n = 102, respectively), the following single-nucleotide polymorphisms (SNPs) in genes related to inflammation were analysed: HSD11B1 (rs11807619), HSD11B1 (rs932335), ABCG2 (rs2231142), SLCO1B1 (rs4149056), IL-10 (rs1800890), TNF (rs1800629), MMP2 (rs243865) and ACE. Three SNPs were associated with late-stage trachoma risk: (i) the T allele of rs11807619, (ii) the C allele of rs932335, which are linked to the HSD11B1 gene (OR = 22.5-27.3), particularly in men when adjusts for gender (OR = 16-16.7); and (iii) D allele of rs4340 in the ACE gene (OR = 5.2-5.3). In fact, significant linkage disequilibrium demonstrated association between ACE gene and HSD11B1 SNPs (r = 0.17-0.179; P = 0.0048-0.0073). Two SNPs HSD11B1 gene (P = 0.013 vs 0.0039) and HSD11B1-ACE haplotypes showed association with late-stage trachoma in Mayan ethnic groups.
期刊介绍:
The journal retains its traditional interest in evolutionary research that is of relevance to geneticists, even if this is not explicitly genetical in nature. The journal covers all areas of genetics and evolution,including molecular genetics and molecular evolution.It publishes papers and review articles on current topics, commentaries and essayson ideas and trends in genetics and evolutionary biology, historical developments, debates and book reviews. From 2010 onwards, the journal has published a special category of papers termed ‘Online Resources’. These are brief reports on the development and the routine use of molecular markers for assessing genetic variability within and among species. Also published are reports outlining pedagogical approaches in genetics teaching.