Thomas A Geddes, Rima Chauduri, Benjamin Parker, Pengyi Yang, James G Burchfield
{"title":"ThunderBolt:大型组学实验的交互式数据共享和分析平台","authors":"Thomas A Geddes, Rima Chauduri, Benjamin Parker, Pengyi Yang, James G Burchfield","doi":"10.1101/2024.07.24.605014","DOIUrl":null,"url":null,"abstract":"Summary: Mass-spectrometry (MS) datasets present a unique set of challenges that make in-depth bioinformatics analysis non-trivial, with analysis requiring both expertise and time. Often these datasets have unique structures that need to be dealt with on an individual basis. Currently, tools providing a fast, interactive and guided way of exploring and analysing these data sets are not readily available. To this end, we have developed ThunderBolt: a highly interactive, point-and-click web-based application providing both bioinformaticians and biologists with a platform for i) searching and comparing multiple omics datasets, ii) fast data exploration and quality control, iii) interactive visualization, iv) pre-processing, v) statistical analysis and vi) functional and network enrichment analysis of large proteomics datasets using the Shiny framework.\nAvailability: ThunderBolt is a shiny-application accessible at https://thunderbolt.sydney.edu.au/","PeriodicalId":501213,"journal":{"name":"bioRxiv - Systems Biology","volume":"27 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"ThunderBolt: An interactive data sharing and analysis platform for large-omics experiments\",\"authors\":\"Thomas A Geddes, Rima Chauduri, Benjamin Parker, Pengyi Yang, James G Burchfield\",\"doi\":\"10.1101/2024.07.24.605014\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Summary: Mass-spectrometry (MS) datasets present a unique set of challenges that make in-depth bioinformatics analysis non-trivial, with analysis requiring both expertise and time. Often these datasets have unique structures that need to be dealt with on an individual basis. Currently, tools providing a fast, interactive and guided way of exploring and analysing these data sets are not readily available. To this end, we have developed ThunderBolt: a highly interactive, point-and-click web-based application providing both bioinformaticians and biologists with a platform for i) searching and comparing multiple omics datasets, ii) fast data exploration and quality control, iii) interactive visualization, iv) pre-processing, v) statistical analysis and vi) functional and network enrichment analysis of large proteomics datasets using the Shiny framework.\\nAvailability: ThunderBolt is a shiny-application accessible at https://thunderbolt.sydney.edu.au/\",\"PeriodicalId\":501213,\"journal\":{\"name\":\"bioRxiv - Systems Biology\",\"volume\":\"27 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-07-26\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"bioRxiv - Systems Biology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1101/2024.07.24.605014\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"bioRxiv - Systems Biology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1101/2024.07.24.605014","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
ThunderBolt: An interactive data sharing and analysis platform for large-omics experiments
Summary: Mass-spectrometry (MS) datasets present a unique set of challenges that make in-depth bioinformatics analysis non-trivial, with analysis requiring both expertise and time. Often these datasets have unique structures that need to be dealt with on an individual basis. Currently, tools providing a fast, interactive and guided way of exploring and analysing these data sets are not readily available. To this end, we have developed ThunderBolt: a highly interactive, point-and-click web-based application providing both bioinformaticians and biologists with a platform for i) searching and comparing multiple omics datasets, ii) fast data exploration and quality control, iii) interactive visualization, iv) pre-processing, v) statistical analysis and vi) functional and network enrichment analysis of large proteomics datasets using the Shiny framework.
Availability: ThunderBolt is a shiny-application accessible at https://thunderbolt.sydney.edu.au/