FURNA:RNA 结构功能注释数据库。

IF 9.8 1区 生物学 Q1 Agricultural and Biological Sciences PLoS Biology Pub Date : 2024-07-29 eCollection Date: 2024-07-01 DOI:10.1371/journal.pbio.3002476
Chengxin Zhang, Lydia Freddolino
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引用次数: 0

摘要

尽管蛋白质数据库(Protein Data Bank)中的三维 RNA 结构越来越多,但大多数实验性 RNA 结构缺乏全面的功能注释。随着非编码 RNA 功能作用的重要性日益明显,对 RNA 功能进行全面注释正成为一个迫切需要解决的问题。为了满足这一需求,我们开发了 FURNA(RNA 的功能),这是第一个用于实验 RNA 结构的数据库,旨在提供高质量功能注释的综合资料库。这些注释包括基因本体术语、酶委员会编号、配体结合位点、RNA 家族、蛋白质结合基序以及相关数据库的交叉引用。FURNA 可在 https://seq2fun.dcmb.med.umich.edu/furna/ 上查阅,以便从结构和序列中快速发现 RNA 的功能。
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FURNA: A database for functional annotations of RNA structures.

Despite the increasing number of 3D RNA structures in the Protein Data Bank, the majority of experimental RNA structures lack thorough functional annotations. As the significance of the functional roles played by noncoding RNAs becomes increasingly apparent, comprehensive annotation of RNA function is becoming a pressing concern. In response to this need, we have developed FURNA (Functions of RNAs), the first database for experimental RNA structures that aims to provide a comprehensive repository of high-quality functional annotations. These include Gene Ontology terms, Enzyme Commission numbers, ligand-binding sites, RNA families, protein-binding motifs, and cross-references to related databases. FURNA is available at https://seq2fun.dcmb.med.umich.edu/furna/ to enable quick discovery of RNA functions from their structures and sequences.

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来源期刊
PLoS Biology
PLoS Biology BIOCHEMISTRY & MOLECULAR BIOLOGY-BIOLOGY
CiteScore
15.40
自引率
2.00%
发文量
359
审稿时长
3-8 weeks
期刊介绍: PLOS Biology is the flagship journal of the Public Library of Science (PLOS) and focuses on publishing groundbreaking and relevant research in all areas of biological science. The journal features works at various scales, ranging from molecules to ecosystems, and also encourages interdisciplinary studies. PLOS Biology publishes articles that demonstrate exceptional significance, originality, and relevance, with a high standard of scientific rigor in methodology, reporting, and conclusions. The journal aims to advance science and serve the research community by transforming research communication to align with the research process. It offers evolving article types and policies that empower authors to share the complete story behind their scientific findings with a diverse global audience of researchers, educators, policymakers, patient advocacy groups, and the general public. PLOS Biology, along with other PLOS journals, is widely indexed by major services such as Crossref, Dimensions, DOAJ, Google Scholar, PubMed, PubMed Central, Scopus, and Web of Science. Additionally, PLOS Biology is indexed by various other services including AGRICOLA, Biological Abstracts, BIOSYS Previews, CABI CAB Abstracts, CABI Global Health, CAPES, CAS, CNKI, Embase, Journal Guide, MEDLINE, and Zoological Record, ensuring that the research content is easily accessible and discoverable by a wide range of audiences.
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