为药物靶点相互作用预测优化混合深度学习模型:进化算法的比较分析

IF 3 4区 计算机科学 Q2 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Expert Systems Pub Date : 2024-07-19 DOI:10.1111/exsy.13683
Moolchand Sharma, Aryan Bhatia, Akhil, A. Dutta, Shtwai Alsubai
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引用次数: 0

摘要

在药物-目标相互作用(DTI)预测领域,本研究调查并对比了各种进化算法在微调复杂的混合深度学习模型方面的功效。认识到 DTI 在药物发现和重新定位中的关键作用,我们通过将问题重构为回归任务来应对二元分类的挑战。我们的重点是卷积自注意力网络与基于注意力的双向长短期记忆网络(CSAN-BiLSTM-Att),这是一个结合了卷积神经网络(CNN)块、自注意力机制和双向 LSTM 层的混合模型。为了优化这一复杂模型,我们采用了差分进化(DE)、粒子群优化(PSO)、记忆粒子群优化算法(MPSOA)、火鹰优化(FHO)和人工蜂鸟算法(AHA)。通过全面的比较分析,我们评估了这些进化算法在提高 CSAN-BiLSTM-Att 模型有效性方面的性能。通过研究每种算法的优缺点,我们的研究旨在为 DTI 预测提供有价值的见解,为高级深度学习模型的超参数调整确定最有效的进化算法。值得注意的是,火鹰优化(FHO)特别有前途,它在 KIBA 数据集和 DAVIS 数据集上分别获得了 0.974 和 0.894 的最高一致性指数(C-index),并在这两个数据集的连续预测排名中表现出了非凡的准确性。
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Optimizing hybrid deep learning models for drug‐target interaction prediction: A comparative analysis of evolutionary algorithms
In the realm of Drug‐Target Interaction (DTI) prediction, this research investigates and contrasts the efficacy of diverse evolutionary algorithms in fine‐tuning a sophisticated hybrid deep learning model. Recognizing the critical role of DTI in drug discovery and repositioning, we tackle the challenges of binary classification by reframing the problem as a regression task. Our focus lies on the Convolution Self‐Attention Network with Attention‐based bidirectional Long Short‐Term Memory Network (CSAN‐BiLSTM‐Att), a hybrid model combining convolutional neural network (CNN) blocks, self‐attention mechanisms, and bidirectional LSTM layers. To optimize this complex model, we employ Differential Evolution (DE), Particle Swarm Optimization (PSO), Memetic Particle Swarm Optimization Algorithm (MPSOA), Fire Hawk Optimization (FHO), and Artificial Hummingbird Algorithm (AHA). Through thorough comparative analysis, we evaluate the performance of these evolutionary algorithms in enhancing the CSAN‐BiLSTM‐Att model's effectiveness. By examining the strengths and weaknesses of each algorithm, our study aims to provide valuable insights into DTI prediction, identifying the most effective evolutionary algorithm for hyperparameter tuning in advanced deep learning models. Notably, Fire‐hawk optimization (FHO) emerges as particularly promising, achieving the highest Concordance Index (C‐index) as 0.974 for KIBA datasets and 0.894 for DAVIS datasets and demonstrating exceptional accuracy in ranking continuous predictions across both the datasets.
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来源期刊
Expert Systems
Expert Systems 工程技术-计算机:理论方法
CiteScore
7.40
自引率
6.10%
发文量
266
审稿时长
24 months
期刊介绍: Expert Systems: The Journal of Knowledge Engineering publishes papers dealing with all aspects of knowledge engineering, including individual methods and techniques in knowledge acquisition and representation, and their application in the construction of systems – including expert systems – based thereon. Detailed scientific evaluation is an essential part of any paper. As well as traditional application areas, such as Software and Requirements Engineering, Human-Computer Interaction, and Artificial Intelligence, we are aiming at the new and growing markets for these technologies, such as Business, Economy, Market Research, and Medical and Health Care. The shift towards this new focus will be marked by a series of special issues covering hot and emergent topics.
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