比较利用 mpMRI 与整装组织学相关联的数据融合策略自动检测前列腺病变。

IF 3.3 2区 医学 Q2 ONCOLOGY Radiation Oncology Pub Date : 2024-07-29 DOI:10.1186/s13014-024-02471-0
Deepa Darshini Gunashekar, Lars Bielak, Benedict Oerther, Matthias Benndorf, Andrea Nedelcu, Samantha Hickey, Constantinos Zamboglou, Anca-Ligia Grosu, Michael Bock
{"title":"比较利用 mpMRI 与整装组织学相关联的数据融合策略自动检测前列腺病变。","authors":"Deepa Darshini Gunashekar, Lars Bielak, Benedict Oerther, Matthias Benndorf, Andrea Nedelcu, Samantha Hickey, Constantinos Zamboglou, Anca-Ligia Grosu, Michael Bock","doi":"10.1186/s13014-024-02471-0","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>In this work, we compare input level, feature level and decision level data fusion techniques for automatic detection of clinically significant prostate lesions (csPCa).</p><p><strong>Methods: </strong>Multiple deep learning CNN architectures were developed using the Unet as the baseline. The CNNs use both multiparametric MRI images (T2W, ADC, and High b-value) and quantitative clinical data (prostate specific antigen (PSA), PSA density (PSAD), prostate gland volume & gross tumor volume (GTV)), and only mp-MRI images (n = 118), as input. In addition, co-registered ground truth data from whole mount histopathology images (n = 22) were used as a test set for evaluation.</p><p><strong>Results: </strong>The CNNs achieved for early/intermediate / late level fusion a precision of 0.41/0.51/0.61, recall value of 0.18/0.22/0.25, an average precision of 0.13 / 0.19 / 0.27, and F scores of 0.55/0.67/ 0.76. Dice Sorensen Coefficient (DSC) was used to evaluate the influence of combining mpMRI with parametric clinical data for the detection of csPCa. We compared the DSC between the predictions of CNN's trained with mpMRI and parametric clinical and the CNN's trained with only mpMRI images as input with the ground truth. We obtained a DSC of data 0.30/0.34/0.36 and 0.26/0.33/0.34 respectively. Additionally, we evaluated the influence of each mpMRI input channel for the task of csPCa detection and obtained a DSC of 0.14 / 0.25 / 0.28.</p><p><strong>Conclusion: </strong>The results show that the decision level fusion network performs better for the task of prostate lesion detection. Combining mpMRI data with quantitative clinical data does not show significant differences between these networks (p = 0.26/0.62/0.85). The results show that CNNs trained with all mpMRI data outperform CNNs with less input channels which is consistent with current clinical protocols where the same input is used for PI-RADS lesion scoring.</p><p><strong>Trial registration: </strong>The trial was registered retrospectively at the German Register for Clinical Studies (DRKS) under proposal number Nr. 476/14 & 476/19.</p>","PeriodicalId":49639,"journal":{"name":"Radiation Oncology","volume":null,"pages":null},"PeriodicalIF":3.3000,"publicationDate":"2024-07-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11287985/pdf/","citationCount":"0","resultStr":"{\"title\":\"Comparison of data fusion strategies for automated prostate lesion detection using mpMRI correlated with whole mount histology.\",\"authors\":\"Deepa Darshini Gunashekar, Lars Bielak, Benedict Oerther, Matthias Benndorf, Andrea Nedelcu, Samantha Hickey, Constantinos Zamboglou, Anca-Ligia Grosu, Michael Bock\",\"doi\":\"10.1186/s13014-024-02471-0\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>In this work, we compare input level, feature level and decision level data fusion techniques for automatic detection of clinically significant prostate lesions (csPCa).</p><p><strong>Methods: </strong>Multiple deep learning CNN architectures were developed using the Unet as the baseline. The CNNs use both multiparametric MRI images (T2W, ADC, and High b-value) and quantitative clinical data (prostate specific antigen (PSA), PSA density (PSAD), prostate gland volume & gross tumor volume (GTV)), and only mp-MRI images (n = 118), as input. In addition, co-registered ground truth data from whole mount histopathology images (n = 22) were used as a test set for evaluation.</p><p><strong>Results: </strong>The CNNs achieved for early/intermediate / late level fusion a precision of 0.41/0.51/0.61, recall value of 0.18/0.22/0.25, an average precision of 0.13 / 0.19 / 0.27, and F scores of 0.55/0.67/ 0.76. Dice Sorensen Coefficient (DSC) was used to evaluate the influence of combining mpMRI with parametric clinical data for the detection of csPCa. We compared the DSC between the predictions of CNN's trained with mpMRI and parametric clinical and the CNN's trained with only mpMRI images as input with the ground truth. We obtained a DSC of data 0.30/0.34/0.36 and 0.26/0.33/0.34 respectively. Additionally, we evaluated the influence of each mpMRI input channel for the task of csPCa detection and obtained a DSC of 0.14 / 0.25 / 0.28.</p><p><strong>Conclusion: </strong>The results show that the decision level fusion network performs better for the task of prostate lesion detection. Combining mpMRI data with quantitative clinical data does not show significant differences between these networks (p = 0.26/0.62/0.85). The results show that CNNs trained with all mpMRI data outperform CNNs with less input channels which is consistent with current clinical protocols where the same input is used for PI-RADS lesion scoring.</p><p><strong>Trial registration: </strong>The trial was registered retrospectively at the German Register for Clinical Studies (DRKS) under proposal number Nr. 476/14 & 476/19.</p>\",\"PeriodicalId\":49639,\"journal\":{\"name\":\"Radiation Oncology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":3.3000,\"publicationDate\":\"2024-07-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11287985/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Radiation Oncology\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.1186/s13014-024-02471-0\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ONCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Radiation Oncology","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1186/s13014-024-02471-0","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ONCOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

背景:在这项工作中,我们比较了用于临床重大前列腺病变(csPCa)自动检测的输入级、特征级和决策级数据融合技术:在这项工作中,我们比较了用于自动检测有临床意义的前列腺病变(csPCa)的输入级、特征级和决策级数据融合技术:方法:以 Unet 为基线,开发了多种深度学习 CNN 架构。CNN 使用多参数 MRI 图像(T2W、ADC 和高 b 值)和定量临床数据(前列腺特异性抗原 (PSA)、前列腺特异性抗原密度 (PSAD)、前列腺腺体体积和肿瘤总体积 (GTV)),并仅将 mp-MRI 图像(n = 118)作为输入。此外,全装载组织病理学图像(n = 22)的共注册地面真实数据也被用作评估测试集:结果:CNN 的早期/中期/晚期融合精确度为 0.41/0.51/0.61,召回值为 0.18/0.22/0.25,平均精确度为 0.13 / 0.19 / 0.27,F 分数为 0.55/0.67/ 0.76。戴斯-索伦森系数(DSC)用于评估 mpMRI 与参数临床数据相结合对检测 csPCa 的影响。我们比较了使用 mpMRI 和临床参数训练的 CNN 预测结果与仅使用 mpMRI 图像作为输入的 CNN 预测结果之间的 DSC 差异。我们得到的 DSC 数据分别为 0.30/0.34/0.36 和 0.26/0.33/0.34。此外,我们还评估了每个 mpMRI 输入通道对 csPCa 检测任务的影响,得到的 DSC 分别为 0.14 / 0.25 / 0.28:结果表明,决策层融合网络在前列腺病变检测任务中表现更佳。将 mpMRI 数据与定量临床数据相结合,并未发现这些网络之间存在显著差异(p = 0.26/0.62/0.85)。结果表明,使用所有 mpMRI 数据训练的 CNN 优于使用较少输入通道的 CNN,这与当前的临床方案一致,即使用相同的输入进行 PI-RADS 病变评分:该试验在德国临床研究注册中心(DRKS)进行了回顾性注册,注册号为476/14和476/19。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Comparison of data fusion strategies for automated prostate lesion detection using mpMRI correlated with whole mount histology.

Background: In this work, we compare input level, feature level and decision level data fusion techniques for automatic detection of clinically significant prostate lesions (csPCa).

Methods: Multiple deep learning CNN architectures were developed using the Unet as the baseline. The CNNs use both multiparametric MRI images (T2W, ADC, and High b-value) and quantitative clinical data (prostate specific antigen (PSA), PSA density (PSAD), prostate gland volume & gross tumor volume (GTV)), and only mp-MRI images (n = 118), as input. In addition, co-registered ground truth data from whole mount histopathology images (n = 22) were used as a test set for evaluation.

Results: The CNNs achieved for early/intermediate / late level fusion a precision of 0.41/0.51/0.61, recall value of 0.18/0.22/0.25, an average precision of 0.13 / 0.19 / 0.27, and F scores of 0.55/0.67/ 0.76. Dice Sorensen Coefficient (DSC) was used to evaluate the influence of combining mpMRI with parametric clinical data for the detection of csPCa. We compared the DSC between the predictions of CNN's trained with mpMRI and parametric clinical and the CNN's trained with only mpMRI images as input with the ground truth. We obtained a DSC of data 0.30/0.34/0.36 and 0.26/0.33/0.34 respectively. Additionally, we evaluated the influence of each mpMRI input channel for the task of csPCa detection and obtained a DSC of 0.14 / 0.25 / 0.28.

Conclusion: The results show that the decision level fusion network performs better for the task of prostate lesion detection. Combining mpMRI data with quantitative clinical data does not show significant differences between these networks (p = 0.26/0.62/0.85). The results show that CNNs trained with all mpMRI data outperform CNNs with less input channels which is consistent with current clinical protocols where the same input is used for PI-RADS lesion scoring.

Trial registration: The trial was registered retrospectively at the German Register for Clinical Studies (DRKS) under proposal number Nr. 476/14 & 476/19.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Radiation Oncology
Radiation Oncology ONCOLOGY-RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING
CiteScore
6.50
自引率
2.80%
发文量
181
审稿时长
3-6 weeks
期刊介绍: Radiation Oncology encompasses all aspects of research that impacts on the treatment of cancer using radiation. It publishes findings in molecular and cellular radiation biology, radiation physics, radiation technology, and clinical oncology.
期刊最新文献
Feasibility of Biology-guided Radiotherapy (BgRT) Targeting Fluorodeoxyglucose (FDG) avid liver metastases Secondary solid malignancies in long-term survivors after total body irradiation Study protocol: Optimising patient positioning for the planning of accelerated partial breast radiotherapy for the integrated magnetic resonance linear accelerator: OPRAH MRL The significance of risk stratification through nomogram-based assessment in determining postmastectomy radiotherapy for patients diagnosed with pT1 − 2N1M0 breast cancer Spatially fractionated GRID radiation potentiates immune-mediated tumor control
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1