{"title":"不同时间点 Periploca sepium 根系盐胁迫响应的转录组分析","authors":"Guangping Wang, Cuiting Han, Yan Zhao, Xin Gao, Xiankuan Li, Jian Zhang","doi":"10.1007/s00344-024-11429-1","DOIUrl":null,"url":null,"abstract":"<p>Illuminate the genome-wide dynamic response to salt stress in <i>Periploca sepium</i> Bunge and the mining of the key salt-tolerant genes. After 30 days of growth and treatment with 1% NaCl, transcriptome sequencing was performed and select genes were tested for RT-qPCR to ensure transcriptome accuracy. The results showed that there were 2225, 2579, 3852 and 3811 differentially expressed genes (DEGs) under salt stress for 4 h, 12 h, 24 h and 48 h, respectively. In the early stage, the redox balance in <i>P. sepium</i> was broken, and with the increase of ROS, the expression of antioxidant enzymes was also increased, and plant growth was inhibited, which was manifested in the significantly down-regulated expression of GA synthesis genes. With the increase of salt stress time, the process of energy metabolism and resource recombination in <i>P. sepium</i> was strengthened, and protein degradation and synthesis occurred accordingly. After 2 days of response adjustment, the differential genes in plants gradually stabilized, and the expression of genes related to reducing substances such as flavonoids was significantly up-regulated, and the plants re-established a stable state to adapt to the new environment.</p>","PeriodicalId":16842,"journal":{"name":"Journal of Plant Growth Regulation","volume":"490-495 1","pages":""},"PeriodicalIF":3.9000,"publicationDate":"2024-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Transcriptome Analysis of Salt Stress Response in the Root System of Periploca sepium at Different Time Points\",\"authors\":\"Guangping Wang, Cuiting Han, Yan Zhao, Xin Gao, Xiankuan Li, Jian Zhang\",\"doi\":\"10.1007/s00344-024-11429-1\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Illuminate the genome-wide dynamic response to salt stress in <i>Periploca sepium</i> Bunge and the mining of the key salt-tolerant genes. After 30 days of growth and treatment with 1% NaCl, transcriptome sequencing was performed and select genes were tested for RT-qPCR to ensure transcriptome accuracy. The results showed that there were 2225, 2579, 3852 and 3811 differentially expressed genes (DEGs) under salt stress for 4 h, 12 h, 24 h and 48 h, respectively. In the early stage, the redox balance in <i>P. sepium</i> was broken, and with the increase of ROS, the expression of antioxidant enzymes was also increased, and plant growth was inhibited, which was manifested in the significantly down-regulated expression of GA synthesis genes. With the increase of salt stress time, the process of energy metabolism and resource recombination in <i>P. sepium</i> was strengthened, and protein degradation and synthesis occurred accordingly. After 2 days of response adjustment, the differential genes in plants gradually stabilized, and the expression of genes related to reducing substances such as flavonoids was significantly up-regulated, and the plants re-established a stable state to adapt to the new environment.</p>\",\"PeriodicalId\":16842,\"journal\":{\"name\":\"Journal of Plant Growth Regulation\",\"volume\":\"490-495 1\",\"pages\":\"\"},\"PeriodicalIF\":3.9000,\"publicationDate\":\"2024-07-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Plant Growth Regulation\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1007/s00344-024-11429-1\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"PLANT SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Plant Growth Regulation","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s00344-024-11429-1","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
引用次数: 0
摘要
阐明 Periploca sepium Bunge 对盐胁迫的全基因组动态响应并挖掘关键耐盐基因。经过30天的生长和1% NaCl处理后,进行转录组测序,并选择部分基因进行RT-qPCR检测,以确保转录组的准确性。结果表明,在盐胁迫下,4小时、12小时、24小时和48小时分别有2225、2579、3852和3811个差异表达基因(DEGs)。在盐胁迫初期,芹菜体内的氧化还原平衡被打破,随着 ROS 的增加,抗氧化酶的表达也随之增加,植株生长受到抑制,表现为 GA 合成基因的表达显著下调。随着盐胁迫时间的延长,海带的能量代谢和资源重组过程加强,蛋白质的降解和合成也相应发生。经过2天的反应调整,植株体内的差异基因逐渐稳定,黄酮类等还原性物质相关基因的表达明显上调,植株重新建立了适应新环境的稳定状态。
Transcriptome Analysis of Salt Stress Response in the Root System of Periploca sepium at Different Time Points
Illuminate the genome-wide dynamic response to salt stress in Periploca sepium Bunge and the mining of the key salt-tolerant genes. After 30 days of growth and treatment with 1% NaCl, transcriptome sequencing was performed and select genes were tested for RT-qPCR to ensure transcriptome accuracy. The results showed that there were 2225, 2579, 3852 and 3811 differentially expressed genes (DEGs) under salt stress for 4 h, 12 h, 24 h and 48 h, respectively. In the early stage, the redox balance in P. sepium was broken, and with the increase of ROS, the expression of antioxidant enzymes was also increased, and plant growth was inhibited, which was manifested in the significantly down-regulated expression of GA synthesis genes. With the increase of salt stress time, the process of energy metabolism and resource recombination in P. sepium was strengthened, and protein degradation and synthesis occurred accordingly. After 2 days of response adjustment, the differential genes in plants gradually stabilized, and the expression of genes related to reducing substances such as flavonoids was significantly up-regulated, and the plants re-established a stable state to adapt to the new environment.
期刊介绍:
The Journal of Plant Growth Regulation is an international publication featuring original articles on all aspects of plant growth and development. We welcome manuscripts reporting question-based research on various aspects of plant growth and development using hormonal, physiological, environmental, genetic, biophysical, developmental and/or molecular approaches.
The journal also publishes timely reviews on highly relevant areas and/or studies in plant growth and development, including interdisciplinary work with an emphasis on plant growth, plant hormones and plant pathology or abiotic stress.
In addition, the journal features occasional thematic issues with special guest editors, as well as brief communications describing novel techniques and meeting reports.
The journal is unlikely to accept manuscripts that are purely descriptive in nature or reports work with simple tissue culture without attempting to investigate the underlying mechanisms of plant growth regulation, those that focus exclusively on microbial communities, or deal with the (elicitation by plant hormones of) synthesis of secondary metabolites.