统一 "开 "和 "关 "听觉神经反应的适应性、瞬时性和持续性的通用模型。

IF 3.8 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS PLoS Computational Biology Pub Date : 2024-08-02 eCollection Date: 2024-08-01 DOI:10.1371/journal.pcbi.1012288
Ulysse Rançon, Timothée Masquelier, Benoit R Cottereau
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引用次数: 0

摘要

声音是一种时间刺激,被听觉神经系统分解成许多基本组成部分。例如,在当今的听觉神经反应计算模型中,从时间到频谱-时间的转换模拟耳蜗进行的频率分解是广泛采用的第一个处理步骤。同样,声音强度的增减(即原始波形本身或其频谱带)构成了神经代码的关键特征,具有高度的行为意义。然而,尽管科学界对听觉关闭反应的关注与日俱增,但它们与瞬时开启、持续反应和适应的关系仍不清楚。在这种情况下,我们提出了一种基于一对线性滤波器的新通用模型,名为 AdapTrans,它能在一个统一且易于扩展的框架内捕捉到持续和瞬时的 ON 和 OFF 反应。我们证明,使用 AdapTrans 对音频耳蜗图进行过滤,可以准确呈现在不同哺乳动物身上测量到的神经反应的已知特性,例如关断反应对刺激物下落时间和前面声音持续时间的依赖性。此外,在对大量电生理学数据集(可随时部署的 PyTorch 模型和公开共享的预处理数据集)进行监督训练后,我们将我们的框架集成到预测音频刺激神经反应的黄金标准和最先进的机器学习模型中,结果表明 AdapTrans 系统地提高了大鼠和雪貂听觉大脑不同皮质区域内估计反应的预测准确性。这些结果共同推动了我们的框架在计算和系统神经科学家中的应用,使他们愿意提高其听觉模型的可信度和性能。
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A general model unifying the adaptive, transient and sustained properties of ON and OFF auditory neural responses.

Sounds are temporal stimuli decomposed into numerous elementary components by the auditory nervous system. For instance, a temporal to spectro-temporal transformation modelling the frequency decomposition performed by the cochlea is a widely adopted first processing step in today's computational models of auditory neural responses. Similarly, increments and decrements in sound intensity (i.e., of the raw waveform itself or of its spectral bands) constitute critical features of the neural code, with high behavioural significance. However, despite the growing attention of the scientific community on auditory OFF responses, their relationship with transient ON, sustained responses and adaptation remains unclear. In this context, we propose a new general model, based on a pair of linear filters, named AdapTrans, that captures both sustained and transient ON and OFF responses into a unifying and easy to expand framework. We demonstrate that filtering audio cochleagrams with AdapTrans permits to accurately render known properties of neural responses measured in different mammal species such as the dependence of OFF responses on the stimulus fall time and on the preceding sound duration. Furthermore, by integrating our framework into gold standard and state-of-the-art machine learning models that predict neural responses from audio stimuli, following a supervised training on a large compilation of electrophysiology datasets (ready-to-deploy PyTorch models and pre-processed datasets shared publicly), we show that AdapTrans systematically improves the prediction accuracy of estimated responses within different cortical areas of the rat and ferret auditory brain. Together, these results motivate the use of our framework for computational and systems neuroscientists willing to increase the plausibility and performances of their models of audition.

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来源期刊
PLoS Computational Biology
PLoS Computational Biology BIOCHEMICAL RESEARCH METHODS-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
7.10
自引率
4.70%
发文量
820
审稿时长
2.5 months
期刊介绍: PLOS Computational Biology features works of exceptional significance that further our understanding of living systems at all scales—from molecules and cells, to patient populations and ecosystems—through the application of computational methods. Readers include life and computational scientists, who can take the important findings presented here to the next level of discovery. Research articles must be declared as belonging to a relevant section. More information about the sections can be found in the submission guidelines. Research articles should model aspects of biological systems, demonstrate both methodological and scientific novelty, and provide profound new biological insights. Generally, reliability and significance of biological discovery through computation should be validated and enriched by experimental studies. Inclusion of experimental validation is not required for publication, but should be referenced where possible. Inclusion of experimental validation of a modest biological discovery through computation does not render a manuscript suitable for PLOS Computational Biology. Research articles specifically designated as Methods papers should describe outstanding methods of exceptional importance that have been shown, or have the promise to provide new biological insights. The method must already be widely adopted, or have the promise of wide adoption by a broad community of users. Enhancements to existing published methods will only be considered if those enhancements bring exceptional new capabilities.
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