离子通道退化和齿状回颗粒细胞标志性生理特征出现的异质性。

IF 2.1 3区 医学 Q3 NEUROSCIENCES Journal of neurophysiology Pub Date : 2024-09-01 Epub Date: 2024-08-07 DOI:10.1152/jn.00071.2024
Sanjna Kumari, Rishikesh Narayanan
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引用次数: 0

摘要

复杂系统既不是完全确定的,也不是完全随机的。包括单个神经元在内的生物复杂系统表现出随机性的中间状态,它需要整合功能分离的子系统的特定组合。这种生物功能的出现为退化(即不同子系统组合产生类似功能的能力)的表达提供了基础。在这里,我们提出了在形态逼真的齿状回颗粒细胞(GC)模型中,通过不同离子通道组合的功能整合来表达退化性的证据。我们对 16 种主动和被动离子通道进行了 45 个参数的随机搜索,以寻找有效的 GC 模型。有效的模型是那些满足大鼠 GC 的 17 个阈下和阈上细胞尺度电生理测量结果的模型。15,000 个随机模型中的绝大多数(>99%)在电生理学上无效,这表明任意随机的离子通道组合不会产生 GC 功能。141 个有效模型(占 15,000 个模型的 0.94%)在局部和传播电生理测量中表现出异质性和交叉依赖性,这与它们各自的生物对应物相吻合。重要的是,这些有效模型遍布整个参数空间,并在不同参数之间表现出微弱的交叉依赖性。这些观察结果共同表明,既不能通过完全随机的离子通道组合来获得气相生理学,也不存在完全确定的单一参数组合来满足所有约束条件。在评估 GC 及其在生理和病理条件下的稳健性时,应严格考虑与 GC 生理相关的复杂性、测量和参数空间的异质性以及退化性。
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Ion-channel degeneracy and heterogeneities in the emergence of signature physiological characteristics of dentate gyrus granule cells.

Complex systems are neither fully determined nor completely random. Biological complex systems, including single neurons, manifest intermediate regimes of randomness that recruit integration of specific combinations of functionally specialized subsystems. Such emergence of biological function provides the substrate for the expression of degeneracy, the ability of disparate combinations of subsystems to yield similar function. Here, we present evidence for the expression of degeneracy in morphologically realistic models of dentate gyrus granule cells (GCs) through functional integration of disparate ion-channel combinations. We performed a 45-parameter randomized search spanning 16 active and passive ion channels, each biophysically constrained by their gating kinetics and localization profiles, to search for valid GC models. Valid models were those that satisfied 17 sub- and suprathreshold cellular-scale electrophysiological measurements from rat GCs. A vast majority (>99%) of the 15,000 random models were not electrophysiologically valid, demonstrating that arbitrarily random ion-channel combinations would not yield GC functions. The 141 valid models (0.94% of 15,000) manifested heterogeneities in and cross-dependencies across local and propagating electrophysiological measurements, which matched with their respective biological counterparts. Importantly, these valid models were widespread throughout the parametric space and manifested weak cross-dependencies across different parameters. These observations together showed that GC physiology could neither be obtained by entirely random ion-channel combinations nor is there an entirely determined single parametric combination that satisfied all constraints. The complexity, the heterogeneities in measurement and parametric spaces, and degeneracy associated with GC physiology should be rigorously accounted for while assessing GCs and their robustness under physiological and pathological conditions.NEW & NOTEWORTHY A recent study from our laboratory had demonstrated pronounced heterogeneities in a set of 17 electrophysiological measurements obtained from a large population of rat hippocampal granule cells. Here, we demonstrate the manifestation of ion-channel degeneracy in a heterogeneous population of morphologically realistic conductance-based granule cell models that were validated against these measurements and their cross-dependencies. Our analyses show that single neurons are complex entities whose functions emerge through intricate interactions among several functionally specialized subsystems.

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来源期刊
Journal of neurophysiology
Journal of neurophysiology 医学-神经科学
CiteScore
4.80
自引率
8.00%
发文量
255
审稿时长
2-3 weeks
期刊介绍: The Journal of Neurophysiology publishes original articles on the function of the nervous system. All levels of function are included, from the membrane and cell to systems and behavior. Experimental approaches include molecular neurobiology, cell culture and slice preparations, membrane physiology, developmental neurobiology, functional neuroanatomy, neurochemistry, neuropharmacology, systems electrophysiology, imaging and mapping techniques, and behavioral analysis. Experimental preparations may be invertebrate or vertebrate species, including humans. Theoretical studies are acceptable if they are tied closely to the interpretation of experimental data and elucidate principles of broad interest.
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