阵列断层扫描:探索之路。

Methods in microscopy Pub Date : 2024-07-17 eCollection Date: 2024-04-01 DOI:10.1515/mim-2024-0001
Kristina D Micheva, Jemima J Burden, Martina Schifferer
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引用次数: 0

摘要

组织切片是许多生物结构研究方法的核心。在现代体积电子显微镜(vEM)方法中,阵列层析(AT)是基于连续超显微切割、将切片收集到固体支撑物上、通过光镜和/或扫描电子显微镜成像,以及将连续图像重新组合到一个体积中进行分析。虽然超显微技术主要使用标准的电磁设备,但它有几个优点,包括可以长期保存样本,并兼容多尺度和多模式成像。此外,收集序列超薄切片可提高轴向分辨率,并为分子标记提供通道,这有利于光镜和免疫标记,也便于与电磁学进行关联。尽管AT技术有这些优点,但由于其难度和缺乏培训机会,它在成像设备和实验室中的应用并不多。在此,我们将介绍在序列切片和图像分析方面的新进展,这些新进展可促进AT流水线的发展,并提供克服制约因素的解决方案。由于没有一种单一的 vEM 技术能满足视场和分辨率方面的所有需求,我们绘制了一棵决策树,以帮助研究人员在众多可选方案中进行选择。最后,我们阐述了AT方法尚未开发的潜力,以增加对不同生物领域的宝贵洞察力。
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Array tomography: trails to discovery.

Tissue slicing is at the core of many approaches to studying biological structures. Among the modern volume electron microscopy (vEM) methods, array tomography (AT) is based on serial ultramicrotomy, section collection onto solid support, imaging via light and/or scanning electron microscopy, and re-assembly of the serial images into a volume for analysis. While AT largely uses standard EM equipment, it provides several advantages, including long-term preservation of the sample and compatibility with multi-scale and multi-modal imaging. Furthermore, the collection of serial ultrathin sections improves axial resolution and provides access for molecular labeling, which is beneficial for light microscopy and immunolabeling, and facilitates correlation with EM. Despite these benefits, AT techniques are underrepresented in imaging facilities and labs, due to their perceived difficulty and lack of training opportunities. Here we point towards novel developments in serial sectioning and image analysis that facilitate the AT pipeline, and solutions to overcome constraints. Because no single vEM technique can serve all needs regarding field of view and resolution, we sketch a decision tree to aid researchers in navigating the plethora of options available. Lastly, we elaborate on the unexplored potential of AT approaches to add valuable insight in diverse biological fields.

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Array tomography: trails to discovery. FAST-EM array tomography: a workflow for multibeam volume electron microscopy. Quantification of collective signalling in time-lapse microscopy images.
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