透视当前药物发现中的虚拟筛选方法。

IF 6 2区 医学 Q1 PHARMACOLOGY & PHARMACY Expert Opinion on Drug Discovery Pub Date : 2024-08-12 DOI:10.1080/17460441.2024.2390511
Ingo Muegge, Jörg Bentzien, Yunhui Ge
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引用次数: 0

摘要

导言:在过去的二十年里,虚拟筛选(VS)一直是药物发现的有效方法。如今,已对数十亿种商业化合物进行了常规筛选,并有许多成功的虚拟筛选案例被报道。VS方法仍在不断发展,包括机器学习和基于物理的方法:作者研究了 VS 在药物发现中的最新实例,并讨论了计算寻找新药实验关键评估 (CACHE) 挑战赛的前瞻性寻找新药结果。作者还强调了进行VS的成本考虑因素和开源选择,并研究了VS的化学空间覆盖和库选择:先进的 VS 方法,包括机器学习技术的使用和计算机资源的增加,以及合成化学空间访问的便利性,还有商业和开源 VS 平台,都允许对数十亿分子的超大库(ULL)进行查询。大量前瞻性的超大分子库 VS 活动已经在许多靶标类别中产生了强效和结构新颖的新药。尽管如此,当代许多成功的 VS 方法仍然使用规模小得多的聚焦文库。这种明显的对立说明,VS 最好以适合目的的方式进行,选择适当的化学空间。需要开发更好的方法来解决更具挑战性的目标。
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Perspectives on current approaches to virtual screening in drug discovery.

Introduction: For the past two decades, virtual screening (VS) has been an efficient hit finding approach for drug discovery. Today, billions of commercially accessible compounds are routinely screened, and many successful examples of VS have been reported. VS methods continue to evolve, including machine learning and physics-based methods.

Areas covered: The authors examine recent examples of VS in drug discovery and discuss prospective hit finding results from the critical assessment of computational hit-finding experiments (CACHE) challenge. The authors also highlight the cost considerations and open-source options for conducting VS and examine chemical space coverage and library selections for VS.

Expert opinion: The advancement of sophisticated VS approaches, including the use of machine learning techniques and increased computer resources as well as the ease of access to synthetically available chemical spaces, and commercial and open-source VS platforms allow for interrogating ultra-large libraries (ULL) of billions of molecules. An impressive number of prospective ULL VS campaigns have generated potent and structurally novel hits across many target classes. Nonetheless, many successful contemporary VS approaches still use considerably smaller focused libraries. This apparent dichotomy illustrates that VS is best conducted in a fit-for-purpose way choosing an appropriate chemical space. Better methods need to be developed to tackle more challenging targets.

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来源期刊
CiteScore
10.20
自引率
1.60%
发文量
78
审稿时长
6-12 weeks
期刊介绍: Expert Opinion on Drug Discovery (ISSN 1746-0441 [print], 1746-045X [electronic]) is a MEDLINE-indexed, peer-reviewed, international journal publishing review articles on novel technologies involved in the drug discovery process, leading to new leads and reduced attrition rates. Each article is structured to incorporate the author’s own expert opinion on the scope for future development. The Editors welcome: Reviews covering chemoinformatics; bioinformatics; assay development; novel screening technologies; in vitro/in vivo models; structure-based drug design; systems biology Drug Case Histories examining the steps involved in the preclinical and clinical development of a particular drug The audience consists of scientists and managers in the healthcare and pharmaceutical industry, academic pharmaceutical scientists and other closely related professionals looking to enhance the success of their drug candidates through optimisation at the preclinical level.
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