局部邻近分岔导致临界减速的协同效应:蘑菇分岔案例

bioRxiv Pub Date : 2024-08-09 DOI:10.1101/2024.08.08.607203
Mariona Fucho-Rius, Smitha Maretvadakethope, R. Pérez-Carrasco, Àlex Haro, Tomás Alarcón, J. Sardanyés
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引用次数: 0

摘要

非线性系统在临界转换附近的行为对评估复杂系统的稳定性、瞬态特性和恢复能力具有重要意义。在电子电路、量子电动力学、铁磁材料、生态系统和基因调控网络中观察到的临界减速现象中,相变(或分岔)附近的瞬态时间变得极长。通常,这些瞬态遵循定义明确的普遍规律,其形式为 τ ∼ |µ - µc| β,描述了当控制参数 µ 接近临界值 µc 时,瞬态持续时间 τ 如何变化。例如,鞍状节点(SN)分岔后的瞬态延迟受所谓幽灵的影响,遵循 β = -1/2 的规律。尽管在过去几十年中,针对局部和全局的单一分岔,对减速现象进行了深入研究,但当多个分岔相互靠近时的瞬态行为仍然未知。在此,我们将研究两个 SN 分岔坍缩为一个跨临界分岔时的瞬态。为此,我们分析了一个受外部信号调控的自激活基因的简单非线性模型,该模型表现出蘑菇分叉。我们还提出并研究了一个系统的正常形式,该系统有两个 SN 分岔,合并成一个跨临界分岔。对于这两个系统,我们从分析和数值上证明,由于两个幽灵的耦合和跨临界减速,瞬态会协同增加。我们还探讨了基因调控模型中噪声对瞬态的影响。我们的研究表明,内在和外在噪声在瞬变减慢过程中起着相反的作用,这使我们能够控制瞬变的时间而不影响时间的精确性。这就确立了新的分子策略,以产生瞬时远大于相关反应典型时间尺度的基因定时器。
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Local Nearby Bifurcations Lead to Synergies in Critical Slowing Down: the Case of Mushroom Bifurcations
The behavior of nonlinear systems close to critical transitions has relevant implications in assessing complex systems’ stability, transient properties, and resilience. Transient times become extremely long near phase transitions (or bifurcations) in a phenomenon generically known as critical slowing down, observed in electronic circuits, quantum electrodynamics, ferromagnetic materials, ecosystems, and gene regulatory networks. Typically, these transients follow well-defined universal laws of the form τ ∼ |µ − µc| β, describing how their duration, τ, varies as the control parameter, µ, approaches its critical value, µc. For instance, transients’ delays right after a saddle-node (SN) bifurcation, influenced by so-called ghosts, follow β = −1/2. Despite intensive research on slowing down phenomena over the past decades for single bifurcations, both local and global, the behavior of transients when several bifurcations are close to each other remains unknown. Here, we study transients close to two SN bifurcations collapsing into a transcritical one. To do so, we analyze a simple nonlinear model of a self-activating gene regulated by an external signal that exhibits a mushroom bifurcation. We also propose and study a normal form for a system with two SN bifurcations merging into a transcritical one. For both systems, we show analytical and numerical evidence of a synergistic increase in transients due to the coupling of the two ghosts and the transcritical slowing down. We also explore the influence of noise on the transients in the gene-regulatory model. We show that intrinsic and extrinsic noise play opposite roles in the slowing down of the transition allowing us to control the timing of the transition without compromising the precision of the timing. This establishes novel molecular strategies to generate genetic timers with transients much larger than the typical timescales of the reactions involved.
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