葎草紫菀中狼巴氏杆菌内共生体的基因组资源草案

L. Núñez-Rodríguez, Catherine L. Wram, Cedar Hesse, Inga A. Zasada
{"title":"葎草紫菀中狼巴氏杆菌内共生体的基因组资源草案","authors":"L. Núñez-Rodríguez, Catherine L. Wram, Cedar Hesse, Inga A. Zasada","doi":"10.1094/phytofr-05-24-0054-a","DOIUrl":null,"url":null,"abstract":"The bacterial endosymbiont, Wolbachia is known to be associated with different arthropods and only two genera of plant-parasitic nematodes, Pratylenchus and Radopholus. This effort employed a genome skimming approach to discover the presence of endosymbionts in a population of Heterodera humuli sequenced with PacBio long-read sequencing. Wolbachia was found associated with the nematode. The genome of this Wolbachia is 1,051,007 bp and has a GC% (32.6%) within the expected range for the genus. A phylogenetic analysis placed the Wolbachia strain from H. humuli in a clade with another nematode-associated Wolbachia strain reported in Texas, with a bootstrap value of 1. To our knowledge, this is the first published report of Wolbachia associated with H. humuli, expanding the known association of this endosymbiont to three genera of plant-parasitic nematodes. This finding will enhance sequence resources for further comparisons of Wolbachia diversity.","PeriodicalId":508090,"journal":{"name":"PhytoFrontiers™","volume":"38 22","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Draft Genome Resource of a Wolbachia Endosymbiont in Heterodera humuli\",\"authors\":\"L. Núñez-Rodríguez, Catherine L. Wram, Cedar Hesse, Inga A. Zasada\",\"doi\":\"10.1094/phytofr-05-24-0054-a\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The bacterial endosymbiont, Wolbachia is known to be associated with different arthropods and only two genera of plant-parasitic nematodes, Pratylenchus and Radopholus. This effort employed a genome skimming approach to discover the presence of endosymbionts in a population of Heterodera humuli sequenced with PacBio long-read sequencing. Wolbachia was found associated with the nematode. The genome of this Wolbachia is 1,051,007 bp and has a GC% (32.6%) within the expected range for the genus. A phylogenetic analysis placed the Wolbachia strain from H. humuli in a clade with another nematode-associated Wolbachia strain reported in Texas, with a bootstrap value of 1. To our knowledge, this is the first published report of Wolbachia associated with H. humuli, expanding the known association of this endosymbiont to three genera of plant-parasitic nematodes. This finding will enhance sequence resources for further comparisons of Wolbachia diversity.\",\"PeriodicalId\":508090,\"journal\":{\"name\":\"PhytoFrontiers™\",\"volume\":\"38 22\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-08-09\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"PhytoFrontiers™\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1094/phytofr-05-24-0054-a\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"PhytoFrontiers™","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1094/phytofr-05-24-0054-a","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

已知细菌内生体沃尔巴克氏体与不同的节肢动物有关,仅与两个植物寄生线虫属(Pratylenchus 和 Radopholus)有关。这项研究采用了一种基因组撇取方法,以发现用 PacBio 长读程测序技术测序的 Heterodera humuli 群体中是否存在内共生体。发现了与线虫相关的沃尔巴克氏体。这种沃尔巴克氏体的基因组为 1,051,007 bp,GC%(32.6%)在该属的预期范围内。据我们所知,这是首次公开报道与葎草属线虫相关的沃尔巴克氏体,将这种内共生体的已知相关性扩大到三个植物寄生线虫属。这一发现将为进一步比较沃尔巴克氏体的多样性提供更多的序列资源。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Draft Genome Resource of a Wolbachia Endosymbiont in Heterodera humuli
The bacterial endosymbiont, Wolbachia is known to be associated with different arthropods and only two genera of plant-parasitic nematodes, Pratylenchus and Radopholus. This effort employed a genome skimming approach to discover the presence of endosymbionts in a population of Heterodera humuli sequenced with PacBio long-read sequencing. Wolbachia was found associated with the nematode. The genome of this Wolbachia is 1,051,007 bp and has a GC% (32.6%) within the expected range for the genus. A phylogenetic analysis placed the Wolbachia strain from H. humuli in a clade with another nematode-associated Wolbachia strain reported in Texas, with a bootstrap value of 1. To our knowledge, this is the first published report of Wolbachia associated with H. humuli, expanding the known association of this endosymbiont to three genera of plant-parasitic nematodes. This finding will enhance sequence resources for further comparisons of Wolbachia diversity.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Draft Genome Resource of a Wolbachia Endosymbiont in Heterodera humuli Unstable Transgene Expression Affects Long-Term Efficacy of the Arabidopsis Immune Receptor EFR to Confer Quantitative Resistance to Citrus Canker Under Field Conditions First complete genome sequence resource of a Lettuce mosaic virus isolate from the United States of America Effect of calcium propionate dip and spray applications on botrytis blight of ornamental plants A molecular method to assess viability of Phytophthora in infected wood following heat treatment
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1