精氨酸 "魔法 "的起源:通过核磁共振、冷冻电子显微镜和分子动力学模拟研究胍类电荷离子配对和寡精氨酸在水中的聚合作用

Denys Biriukov, Zuzana Osifova, Man Nguyen Thi Hong, Philip E Mason, Martin Dracinsky, Pavel Jungwirth, Jan Heyda, Mattia I Morandi, Mario Vazdar
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摘要

水合离子的同类电荷配对现象是某些离子对在水中独特溶解特性的物理表现。水的高介电常数和相关的离子筛选能力极大地影响了带同类电荷离子之间的相互作用,并有可能在某些情况下将其从排斥转化为吸引。在这项研究中,我们利用核磁共振(NMR)光谱实验,辅以分子动力学(MD)模拟和密度泛函理论(DFT)计算,对水中的 Gdm+ - Gdm+ 接触离子配对进行了实验量化。观察到的相互作用非常微弱,约为 -0.5 kJ mol-1,这与 MD 模拟的理论估计值一致。我们还对比了 Gdm+ 与 NH4+ 阳离子的行为,后者在水中不表现出接触离子配对。DFT 计算预测,Gdm+ 二聚体的核磁共振化学位移小于单体,这与核磁共振滴定曲线一致,后者表现出非线性朗缪尔式行为。此外,我们还对寡精氨酸 R9 进行了冷冻电镜实验,它(与壬烯烯丙基苷 K9 不同)在水中表现出聚集现象。这再次表明胍侧链基团的电荷配对,这些肽在水中的分子动力学模拟也证实了这一点。
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The Origins of Arginine "Magic": Guanidinium Like-Charge Ion Pairing and Oligoarginine Aggregation in Water by NMR, Cryoelectron Microscopy, and Molecular Dynamics Simulations
The phenomenon of like-charge pairing of hydrated ions is a physical manifestation of the unique solvation properties of certain ion pairs in water. Water's high dielectric constant and related ion screening capability significantly influence the interaction between like-charged ions, with the possibility to transform it - in some cases - from repulsion to attraction. Guanidinium cations (Gdm+) represent a quintessential example of such like-charge pairing due to their specific geometry and charge distribution. In this work, we present experimental quantification of Gdm+ - Gdm+ contact ion pairing in water utilizing nuclear magnetic resonance (NMR) spectroscopy experiments complemented by molecular dynamics (MD) simulations and density functional theory (DFT) calculations. The observed interaction is very weak - about -0.5 kJ mol-1 - which aligns with theoretical estimation from MD simulations. We also contrast the behavior of Gdm+ with NH4+ cations, which do no exhibit contact ion pairing in water. DFT calculations predict that the NMR chemical shift of Gdm+ dimers is smaller than that of monomers, in agreement with NMR titration curves that display a nonlinear Langmuir-like behavior. Additionally, we conducted cryo-electron microscopy experiments on oligoarginines R9, which (unlike nona-lysines K9) exhibit aggregation in water. This points again to like charge pairing of the guanidinium side chain groups, as corroborated also by molecular dynamics simulations of these peptides in water.
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