关于天然生物碱胡椒碱的分子动力学和量子化学研究

IF 2.4 3区 化学 Q2 CHEMISTRY, ORGANIC Polycyclic Aromatic Compounds Pub Date : 2024-07-02 DOI:10.1080/10406638.2023.2237631
Ambrish Kumar Srivastava , Abhishek Kumar , Harshita Srivastava , Saurabh Pandey , Narendra Kumar , Goutam Brahmachari , Neeraj Misra
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引用次数: 0

摘要

胡椒碱(一种天然生物碱)是一种具有生物活性的天然产物,属于生物碱系列化合物。本研究使用傅立叶变换红外光谱、1H-NMR 和 13C-NMR 对从黑胡椒中分离出的胡椒碱进行了光谱表征。为了解释光谱特征,我们使用 B3LYP/6-311 + G(d,p) 理论水平计算了胡椒碱优化结构的振动频率,并使用 GIAO 方法计算了 NMR 光谱。根据势能分布分配了标题分子的所有振动模式。计算得出的标度波数和 NMR 化学位移分别与实验的 FT-IR 和 NMR 数据显示出良好的一致性。为了评估胡椒碱的生物活性,我们首先利用 ITK 受体进行了分子对接,然后对所得到的复合物进行了 100 ns 的分子动力学模拟。结果表明胡椒碱可能具有抗炎作用。
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Molecular Dynamics and Quantum Chemical Studies on Piperine, a Naturally Occurring Alkaloid

Piperine (a naturally occurring alkaloid), is a biologically active natural product belonging to the alkaloid series of compounds. In this study, the spectral characterization of piperine isolated from black pepper has been performed using FT-IR, 1H-NMR, and 13C-NMR. To explain spectral features, we have calculated the vibrational frequencies of the optimized structure of piperine using the B3LYP/6-311 + G(d,p) level of theory and NMR spectra using the GIAO method. All vibrational modes of the title molecule have been assigned based on potential energy distribution. The calculated scaled wavenumbers and NMR chemical shifts show good agreement with the experimental FT-IR and NMR data, respectively. To assess the bioactivity of piperine, we have first performed molecular docking using the ITK receptor and subsequently, the molecular dynamics simulation of the resulting complex for 100 ns. The results suggest the potential of piperine for possible anti-inflammatory action.

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来源期刊
Polycyclic Aromatic Compounds
Polycyclic Aromatic Compounds 化学-有机化学
CiteScore
3.70
自引率
20.80%
发文量
412
审稿时长
3 months
期刊介绍: The purpose of Polycyclic Aromatic Compounds is to provide an international and interdisciplinary forum for all aspects of research related to polycyclic aromatic compounds (PAC). Topics range from fundamental research in chemistry (including synthetic and theoretical chemistry) and physics (including astrophysics), as well as thermodynamics, spectroscopy, analytical methods, and biology to applied studies in environmental science, biochemistry, toxicology, and industry. Polycyclic Aromatic Compounds has an outstanding Editorial Board and offers a rapid and efficient peer review process, as well as a flexible open access policy.
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