潜在铁中毒和非酒精性脂肪肝生物标志物的生物信息学分析。

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2024-09-01 DOI:10.4149/gpb_2024017
Xiaoxiao Yu, Kai Yang, Zhihao Fang, Changxu Liu, Titi Hui, Zihao Guo, Zhichao Dong, Chang Liu
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引用次数: 0

摘要

铁突变在非酒精性脂肪肝(NAFLD)的发病过程中起着至关重要的作用。在本研究中,我们旨在利用综合生物信息学方法和实验验证来识别和验证非酒精性脂肪肝中潜在的铁突变相关基因。我们下载了用于筛选差异表达基因(DEGs)的微阵列数据集,并从铁变态反应数据库中确定了这些数据集与铁变态反应相关 DEGs 的交叉点。随后,利用 SVM 分析获得了与铁病相关的 DEGs;然后利用 LASSO 算法确定了六个标记基因。此外,我们还使用 CIBERSORT 算法估算了不同类型免疫细胞的比例。随后,我们构建了药物调控网络和 ceRNA 调控网络。我们确定了六个基因作为非酒精性脂肪肝的标记基因,证明了它们强大的诊断能力。随后的功能富集分析结果显示,这些标记基因与多种疾病相关,并通过调控免疫反应和氨基酸代谢等途径在非酒精性脂肪肝中发挥关键作用。在非酒精性脂肪肝模型中,肝脏 EGR1、IL-6、SOCS1 和 NR4A1 的表达明显下调。我们的研究结果为了解和治疗非酒精性脂肪肝提供了新的见解和分子线索。要评估这些标记物对非酒精性脂肪肝的诊断潜力,还需要进一步的研究。
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Bioinformatics analysis of potential ferroptosis and non-alcoholic fatty liver disease biomarkers.

Ferroptosis plays a crucial role in the development of non-alcoholic fatty liver disease (NAFLD). In this study, we aimed to use a comprehensive bioinformatics approach and experimental validation to identify and verify potential ferroptosis-related genes in NAFLD. We downloaded the microarray datasets for screening differentially expressed genes (DEGs) and identified the intersection of these datasets with ferroptosis-related DEGs from the Ferroptosis database. Subsequently, ferroptosis-related DEGs were obtained using SVM analysis; the LASSO algorithm was then used to identify six marker genes. Furthermore, the CIBERSORT algorithm was used to estimate the proportion of different types of immune cells. Subsequently, we constructed drug regulatory networks and ceRNA regulatory networks. We identified six genes as marker genes for NAFLD, demonstrating their robust diagnostic abilities. Subsequent functional enrichment analysis results revealed that these marker genes were associated with multiple diseases and play a key role in NAFLD via the regulation of immune response and amino acid metabolism, among other pathways. The expression of hepatic EGR1, IL-6, SOCS1, and NR4A1 was significantly downregulated in the NAFLD model. Our findings provide new insights and molecular clues for understanding and treating NAFLD. Further studies are needed to assess the diagnostic potential of these markers for NAFLD.

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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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