Xinyu He, Yujie Tang, Bo Yu, Shixin Li, Yonggong Ren
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Joint Extraction of Biomedical Events Based on Dynamic Path Planning Strategy and Hybrid Neural Network.
Biomedical event detection is a pivotal information extraction task in molecular biology and biomedical research, which provides inspiration for the medical search, disease prevention, and new drug development. The existing methods usually detect simple biomedical events and complex events with the same model, and the performance of the complex biomedical event extraction is relatively low. In this paper, we build different neural networks for simple and complex events respectively, which helps to promote the performance of complex event extraction. To avoid redundant information, we design dynamic path planning strategy for argument detection. To take full use of the information between the trigger identification and argument detection subtasks, and reduce the cascading errors, we build a joint event extraction model. Experimental results demonstrate our approach achieves the best F-score on the biomedical benchmark MLEE dataset and outperforms the recent state-of-the-art methods.
期刊介绍:
IEEE/ACM Transactions on Computational Biology and Bioinformatics emphasizes the algorithmic, mathematical, statistical and computational methods that are central in bioinformatics and computational biology; the development and testing of effective computer programs in bioinformatics; the development of biological databases; and important biological results that are obtained from the use of these methods, programs and databases; the emerging field of Systems Biology, where many forms of data are used to create a computer-based model of a complex biological system