基于动态路径规划策略和混合神经网络的生物医学事件联合提取。

IF 3.6 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS IEEE/ACM Transactions on Computational Biology and Bioinformatics Pub Date : 2024-08-13 DOI:10.1109/TCBB.2024.3442199
Xinyu He, Yujie Tang, Bo Yu, Shixin Li, Yonggong Ren
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引用次数: 0

摘要

生物医学事件检测是分子生物学和生物医学研究中一项关键的信息提取任务,它为医学搜索、疾病预防和新药开发提供了灵感。现有方法通常用同一模型检测简单生物医学事件和复杂事件,复杂生物医学事件提取的性能相对较低。本文针对简单事件和复杂事件分别构建了不同的神经网络,有助于提高复杂事件提取的性能。为了避免冗余信息,我们设计了用于参数检测的动态路径规划策略。为了充分利用触发器识别和参数检测子任务之间的信息,减少级联错误,我们建立了一个联合事件提取模型。实验结果表明,我们的方法在生物医学基准 MLEE 数据集上取得了最佳 F-score,优于最新的先进方法。
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Joint Extraction of Biomedical Events Based on Dynamic Path Planning Strategy and Hybrid Neural Network.

Biomedical event detection is a pivotal information extraction task in molecular biology and biomedical research, which provides inspiration for the medical search, disease prevention, and new drug development. The existing methods usually detect simple biomedical events and complex events with the same model, and the performance of the complex biomedical event extraction is relatively low. In this paper, we build different neural networks for simple and complex events respectively, which helps to promote the performance of complex event extraction. To avoid redundant information, we design dynamic path planning strategy for argument detection. To take full use of the information between the trigger identification and argument detection subtasks, and reduce the cascading errors, we build a joint event extraction model. Experimental results demonstrate our approach achieves the best F-score on the biomedical benchmark MLEE dataset and outperforms the recent state-of-the-art methods.

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来源期刊
CiteScore
7.50
自引率
6.70%
发文量
479
审稿时长
3 months
期刊介绍: IEEE/ACM Transactions on Computational Biology and Bioinformatics emphasizes the algorithmic, mathematical, statistical and computational methods that are central in bioinformatics and computational biology; the development and testing of effective computer programs in bioinformatics; the development of biological databases; and important biological results that are obtained from the use of these methods, programs and databases; the emerging field of Systems Biology, where many forms of data are used to create a computer-based model of a complex biological system
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