优化确定过氧化物酶样纳米酶催化活性和动力学的标准化测定方法。

IF 13.1 1区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Nature Protocols Pub Date : 2024-08-15 DOI:10.1038/s41596-024-01034-7
Jia-Jia Zheng, Feiyan Zhu, Ningning Song, Fang Deng, Qi Chen, Chen Chen, Jiuyang He, Xingfa Gao, Minmin Liang
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引用次数: 0

摘要

纳米酶是具有类似酶催化特性的纳米材料。它们是极具吸引力的试剂,因为它们没有天然酶的局限性(如成本高、稳定性低和难以储存)。为了测试、优化和比较纳米酶,必须建立基本原则和系统标准,以全面表征它们的催化性能。我们 2018 年的方案介绍了如何表征过氧化物酶纳米酶(最广泛使用的纳米酶类型)的催化活性和动力学。这种方法基于 Michaelis-Menten 酶动力学,现在进行了更新,以考虑到纳米材料的独特物理化学特性,这些特性决定了纳米酶的催化动力学。更新后的程序介绍了如何确定活性位点的数量以及其他理化特性,如表面积、形状和尺寸。它还概述了如何利用密度泛函理论方法从晶体结构中计算羟基吸附能。现在的计算结合了这些测量和计算,以更好地描述具有不同形状、大小和组成的过氧化物酶纳米分子的催化动力学特性。由于进一步开发纳米酶需要通过对纳米酶催化位点的电子、几何结构和原子构型进行工程设计来精确控制其活性,因此这一更新方案能更好地描述纳米酶的催化性能,并有利于纳米酶研究的发展。过氧化物酶纳米酶催化活性的表征及其动力学评估可在 4 小时内完成。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Optimizing the standardized assays for determining the catalytic activity and kinetics of peroxidase-like nanozymes.

Nanozymes are nanomaterials with enzyme-like catalytic properties. They are attractive reagents because they do not have the same limitations of natural enzymes (e.g., high cost, low stability and difficult storage). To test, optimize and compare nanozymes, it is important to establish fundamental principles and systematic standards to fully characterize their catalytic performance. Our 2018 protocol describes how to characterize the catalytic activity and kinetics of peroxidase nanozymes, the most widely used type of nanozyme. This approach was based on Michaelis-Menten enzyme kinetics and is now updated to take into account the unique physicochemical properties of nanomaterials that determine the catalytic kinetics of nanozymes. The updated procedure describes how to determine the number of active sites as well as other physicochemical properties such as surface area, shape and size. It also outlines how to calculate the hydroxyl adsorption energy from the crystal structure using the density functional theory method. The calculations now incorporate these measurements and computations to better characterize the catalytic kinetics of peroxidase nanozymes that have different shapes, sizes and compositions. This updated protocol better describes the catalytic performance of nanozymes and benefits the development of nanozyme research since further nanozyme development requires precise control of activity by engineering the electronic, geometric structure and atomic configuration of the catalytic sites of nanozymes. The characterization of the catalytic activity of peroxidase nanozymes and the evaluation of their kinetics can be performed in 4 h. The procedure is suitable for users with expertise in nano- and materials technology.

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来源期刊
Nature Protocols
Nature Protocols 生物-生化研究方法
CiteScore
29.10
自引率
0.70%
发文量
128
审稿时长
4 months
期刊介绍: Nature Protocols focuses on publishing protocols used to address significant biological and biomedical science research questions, including methods grounded in physics and chemistry with practical applications to biological problems. The journal caters to a primary audience of research scientists and, as such, exclusively publishes protocols with research applications. Protocols primarily aimed at influencing patient management and treatment decisions are not featured. The specific techniques covered encompass a wide range, including but not limited to: Biochemistry, Cell biology, Cell culture, Chemical modification, Computational biology, Developmental biology, Epigenomics, Genetic analysis, Genetic modification, Genomics, Imaging, Immunology, Isolation, purification, and separation, Lipidomics, Metabolomics, Microbiology, Model organisms, Nanotechnology, Neuroscience, Nucleic-acid-based molecular biology, Pharmacology, Plant biology, Protein analysis, Proteomics, Spectroscopy, Structural biology, Synthetic chemistry, Tissue culture, Toxicology, and Virology.
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