基于 CNN-BiLSTM 算法与光纤数据集的 COVID-19 IgG 抗体检测。

IF 2.2 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Journal of virological methods Pub Date : 2024-08-16 DOI:10.1016/j.jviromet.2024.115011
Mohammed Jawad Ahmed Alathari , Yousif Al Mashhadany , Ahmad Ashrif A. Bakar , Mohd Hadri Hafiz Mokhtar , Mohd Saiful Dzulkefly Bin Zan , Norhana Arsad
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引用次数: 0

摘要

COVID-19 检测急需高效准确的自动筛选工具,这促使研究人员努力探索各种方法。在本研究中,我们利用卷积神经网络(CNN)与双向长短期记忆(Bi-LSTM)网络相结合的混合模型,结合 SARS-CoV-2 免疫球蛋白 G (IgG) 抗体的光纤数据,对 COVID-19 检测进行了开创性的研究。我们的研究引入了一个全面的数据预处理管道,并评估了四种不同深度学习(DL)算法的性能:CNN、CNN-RNN、BiLSTM 和 CNN-BiLSTM 在将样本划分为 COVID-19 病毒阳性或阴性时的性能。其中,CNN-BiLSTM 分类器在训练数据集上表现优异,准确率达到 89%,召回率达到 88%,精确率达到 90%,F1 分数达到 89%,特异性达到 90%,几何平均数(G-mean)达到 89%,接收者操作特征(ROC)达到 96%。此外,还将取得的分类结果与文献报道的结果进行了比较。研究结果表明,所提出的模型具有对 COVID-19 进行分类的潜力,可作为医疗保健专业人员的重要工具。使用 IgG 抗体检测病毒提高了诊断工具的特异性和准确性。
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COVID-19 IgG antibodies detection based on CNN-BiLSTM algorithm combined with fiber-optic dataset

The urgent need for efficient and accurate automated screening tools for COVID-19 detection has led to research efforts exploring various approaches. In this study, we present pioneering research on COVID-19 detection using a hybrid model that combines convolutional neural networks (CNN) with a bi-directional long short-term memory (Bi-LSTM) network, in conjunction with fiber optic data for SARS-CoV-2 Immunoglobulin G (IgG) antibodies. Our research introduces a comprehensive data preprocessing pipeline and evaluates the performance of four different deep learning (DL) algorithms: CNN, CNN-RNN, BiLSTM, and CNN-BiLSTM, in classifying samples as positive or negative for the COVID-19 virus. Among these, the CNN-BiLSTM classifier demonstrated superior performance on the training datasets, achieving an accuracy of 89 %, a recall of 88 %, a precision of 90 %, an F1-score of 89 %, a specificity of 90 %, a geometric mean (G-mean) of 89 %, and a receiver operating characteristic (ROC) of 96 %. In addition, the achieved classification results were compared with those reported in the literature. The findings indicate that the proposed model has promising potential for classifying COVID-19 and could serve as a valuable tool for healthcare professionals. The use of IgG antibodies to detect the virus enhances the specificity and accuracy of the diagnostic tool.

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来源期刊
CiteScore
5.80
自引率
0.00%
发文量
209
审稿时长
41 days
期刊介绍: The Journal of Virological Methods focuses on original, high quality research papers that describe novel and comprehensively tested methods which enhance human, animal, plant, bacterial or environmental virology and prions research and discovery. The methods may include, but not limited to, the study of: Viral components and morphology- Virus isolation, propagation and development of viral vectors- Viral pathogenesis, oncogenesis, vaccines and antivirals- Virus replication, host-pathogen interactions and responses- Virus transmission, prevention, control and treatment- Viral metagenomics and virome- Virus ecology, adaption and evolution- Applied virology such as nanotechnology- Viral diagnosis with novelty and comprehensive evaluation. We seek articles, systematic reviews, meta-analyses and laboratory protocols that include comprehensive technical details with statistical confirmations that provide validations against current best practice, international standards or quality assurance programs and which advance knowledge in virology leading to improved medical, veterinary or agricultural practices and management.
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