通过加权 p 值控制异构数据病变-症状映射的错误发现率

IF 1.3 3区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Biometrical Journal Pub Date : 2024-08-20 DOI:10.1002/bimj.202300198
Siyu Zheng, Alexander C. McLain, Joshua Habiger, Christopher Rorden, Julius Fridriksson
{"title":"通过加权 p 值控制异构数据病变-症状映射的错误发现率","authors":"Siyu Zheng,&nbsp;Alexander C. McLain,&nbsp;Joshua Habiger,&nbsp;Christopher Rorden,&nbsp;Julius Fridriksson","doi":"10.1002/bimj.202300198","DOIUrl":null,"url":null,"abstract":"<p>Lesion-symptom mapping studies provide insight into what areas of the brain are involved in different aspects of cognition. This is commonly done via behavioral testing in patients with a naturally occurring brain injury or lesions (e.g., strokes or brain tumors). This results in high-dimensional observational data where lesion status (present/absent) is nonuniformly distributed, with some voxels having lesions in very few (or no) subjects. In this situation, mass univariate hypothesis tests have severe power heterogeneity where many tests are known a priori to have little to no power. Recent advancements in multiple testing methodologies allow researchers to weigh hypotheses according to side information (e.g., information on power heterogeneity). In this paper, we propose the use of <i>p</i>-value weighting for voxel-based lesion-symptom mapping studies. The weights are created using the distribution of lesion status and spatial information to estimate different non-null prior probabilities for each hypothesis test through some common approaches. We provide a <i>monotone minimum weight</i> criterion, which requires minimum a priori power information. Our methods are demonstrated on dependent simulated data and an aphasia study investigating which regions of the brain are associated with the severity of language impairment among stroke survivors. The results demonstrate that the proposed methods have robust error control and can increase power. Further, we showcase how weights can be used to identify regions that are inconclusive due to lack of power.</p>","PeriodicalId":55360,"journal":{"name":"Biometrical Journal","volume":null,"pages":null},"PeriodicalIF":1.3000,"publicationDate":"2024-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/bimj.202300198","citationCount":"0","resultStr":"{\"title\":\"False Discovery Rate Control for Lesion-Symptom Mapping With Heterogeneous Data via Weighted p-Values\",\"authors\":\"Siyu Zheng,&nbsp;Alexander C. McLain,&nbsp;Joshua Habiger,&nbsp;Christopher Rorden,&nbsp;Julius Fridriksson\",\"doi\":\"10.1002/bimj.202300198\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Lesion-symptom mapping studies provide insight into what areas of the brain are involved in different aspects of cognition. This is commonly done via behavioral testing in patients with a naturally occurring brain injury or lesions (e.g., strokes or brain tumors). This results in high-dimensional observational data where lesion status (present/absent) is nonuniformly distributed, with some voxels having lesions in very few (or no) subjects. In this situation, mass univariate hypothesis tests have severe power heterogeneity where many tests are known a priori to have little to no power. Recent advancements in multiple testing methodologies allow researchers to weigh hypotheses according to side information (e.g., information on power heterogeneity). In this paper, we propose the use of <i>p</i>-value weighting for voxel-based lesion-symptom mapping studies. The weights are created using the distribution of lesion status and spatial information to estimate different non-null prior probabilities for each hypothesis test through some common approaches. We provide a <i>monotone minimum weight</i> criterion, which requires minimum a priori power information. Our methods are demonstrated on dependent simulated data and an aphasia study investigating which regions of the brain are associated with the severity of language impairment among stroke survivors. The results demonstrate that the proposed methods have robust error control and can increase power. Further, we showcase how weights can be used to identify regions that are inconclusive due to lack of power.</p>\",\"PeriodicalId\":55360,\"journal\":{\"name\":\"Biometrical Journal\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":1.3000,\"publicationDate\":\"2024-08-20\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://onlinelibrary.wiley.com/doi/epdf/10.1002/bimj.202300198\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biometrical Journal\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/bimj.202300198\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MATHEMATICAL & COMPUTATIONAL BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biometrical Journal","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/bimj.202300198","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MATHEMATICAL & COMPUTATIONAL BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

病变-症状图谱研究有助于深入了解大脑的哪些区域与认知的不同方面有关。这通常是通过对自然发生的脑损伤或病变(如中风或脑肿瘤)患者进行行为测试来实现的。这就产生了高维观察数据,其中病变状态(存在/不存在)分布不均匀,一些体素在极少数(或没有)受试者中存在病变。在这种情况下,大规模单变量假设检验具有严重的功率异质性,许多检验先验已知几乎没有功率。多重测试方法的最新进展使研究人员能够根据侧面信息(如功率异质性信息)对假设进行权衡。在本文中,我们建议在基于体素的病变症状图谱研究中使用 p 值加权法。权重是利用病变状态和空间信息的分布来创建的,通过一些常见的方法来估计每个假设检验的不同非空先验概率。我们提供了一个单调最小权重标准,它要求最小的先验功率信息。我们的方法在依赖性模拟数据和一项失语症研究中得到了验证,该研究调查了大脑的哪些区域与中风幸存者语言障碍的严重程度相关。结果表明,所提出的方法具有强大的误差控制能力,并能提高功率。此外,我们还展示了如何利用权重来识别由于缺乏力量而无法得出结论的区域。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
False Discovery Rate Control for Lesion-Symptom Mapping With Heterogeneous Data via Weighted p-Values

Lesion-symptom mapping studies provide insight into what areas of the brain are involved in different aspects of cognition. This is commonly done via behavioral testing in patients with a naturally occurring brain injury or lesions (e.g., strokes or brain tumors). This results in high-dimensional observational data where lesion status (present/absent) is nonuniformly distributed, with some voxels having lesions in very few (or no) subjects. In this situation, mass univariate hypothesis tests have severe power heterogeneity where many tests are known a priori to have little to no power. Recent advancements in multiple testing methodologies allow researchers to weigh hypotheses according to side information (e.g., information on power heterogeneity). In this paper, we propose the use of p-value weighting for voxel-based lesion-symptom mapping studies. The weights are created using the distribution of lesion status and spatial information to estimate different non-null prior probabilities for each hypothesis test through some common approaches. We provide a monotone minimum weight criterion, which requires minimum a priori power information. Our methods are demonstrated on dependent simulated data and an aphasia study investigating which regions of the brain are associated with the severity of language impairment among stroke survivors. The results demonstrate that the proposed methods have robust error control and can increase power. Further, we showcase how weights can be used to identify regions that are inconclusive due to lack of power.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Biometrical Journal
Biometrical Journal 生物-数学与计算生物学
CiteScore
3.20
自引率
5.90%
发文量
119
审稿时长
6-12 weeks
期刊介绍: Biometrical Journal publishes papers on statistical methods and their applications in life sciences including medicine, environmental sciences and agriculture. Methodological developments should be motivated by an interesting and relevant problem from these areas. Ideally the manuscript should include a description of the problem and a section detailing the application of the new methodology to the problem. Case studies, review articles and letters to the editors are also welcome. Papers containing only extensive mathematical theory are not suitable for publication in Biometrical Journal.
期刊最新文献
Post-Estimation Shrinkage in Full and Selected Linear Regression Models in Low-Dimensional Data Revisited Functional Data Analysis: An Introduction and Recent Developments Meta-Analysis of Diagnostic Accuracy Studies With Multiple Thresholds: Comparison of Approaches in a Simulation Study A Network-Constrain Weibull AFT Model for Biomarkers Discovery Multivariate Scalar on Multidimensional Distribution Regression With Application to Modeling the Association Between Physical Activity and Cognitive Functions
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1