基于线性回归和整数编程的聚合物推断方法。

IF 3.6 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS IEEE/ACM Transactions on Computational Biology and Bioinformatics Pub Date : 2024-08-22 DOI:10.1109/TCBB.2024.3447780
Ryota Ido, Shengjuan Cao, Jianshen Zhu, Naveed Ahmed Azam, Kazuya Haraguchi, Liang Zhao, Hiroshi Nagamochi, Tatsuya Akutsu
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引用次数: 0

摘要

最近有人提出了一种新的框架,利用人工神经网络和混合整数线性规划设计具有所需化学特性的化合物分子结构。在本文中,我们根据该框架设计了一种推断聚合物的新方法。为此,我们引入了一种将聚合物表示为单体形式的新方法,并定义了具有聚合物结构特征的新描述符。我们还将线性回归作为构建该框架预测函数的基础模块。我们的计算实验结果揭示了聚合物的一系列化学特性,用线性回归构建的预测函数对这些特性表现良好。我们还发现,所提出的方法可以推断出单体中含有多达 50 个非氢原子的聚合物。
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A Method for Inferring Polymers Based on Linear Regression and Integer Programming.

A novel framework has recently been proposed for designing the molecular structure of chemical compounds with a desired chemical property using both artificial neural networks and mixed integer linear programming. In this paper, we design a new method for inferring a polymer based on the framework. For this, we introduce a new way of representing a polymer as a form of monomer and define new descriptors that feature the structure of polymers. We also use linear regression as a building block of constructing a prediction function in the framework. The results of our computational experiments reveal a set of chemical properties on polymers to which a prediction function constructed with linear regression performs well. We also observe that the proposed method can infer polymers with up to 50 nonhydrogen atoms in a monomer form.

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来源期刊
CiteScore
7.50
自引率
6.70%
发文量
479
审稿时长
3 months
期刊介绍: IEEE/ACM Transactions on Computational Biology and Bioinformatics emphasizes the algorithmic, mathematical, statistical and computational methods that are central in bioinformatics and computational biology; the development and testing of effective computer programs in bioinformatics; the development of biological databases; and important biological results that are obtained from the use of these methods, programs and databases; the emerging field of Systems Biology, where many forms of data are used to create a computer-based model of a complex biological system
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