基于 scRNA-Seq 分析的 ADSCs 诱导分化成星形胶质细胞的动态进化途径特征

IF 4.6 2区 医学 Q1 NEUROSCIENCES Molecular Neurobiology Pub Date : 2025-03-01 Epub Date: 2024-08-27 DOI:10.1007/s12035-024-04414-y
Xiaodong Yuan, Qingxi Long, Wen Li, Qi Yan, Pingshu Zhang
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引用次数: 0

摘要

我们采用单细胞转录组测序技术揭示了脂肪源性基质细胞(ADSCs)向星形胶质细胞分化过程中基因表达的动态变化。我们使用 10 × Chromium 平台对 ADSCs 组和诱导组的细胞在 2、7、14 和 21 天进行了单细胞 RNA 测序。数据经过了质量控制和降维处理。使用 Monocle2 构建细胞分化轨迹,并使用差异选择算法鉴定每个细胞群中的差异表达基因(DEG)。使用基因本体(GO)和京都基因组百科全书(KEGG)对每个时间点的 DEGs 进行注释,并使用 SCENIC 分析转录因子的调控强度。综合所有组别,共将 5 个样本分为 13 个细胞簇(0-12 个簇)。集群间的 DEGs 以及与 ADSCs 在不同诱导时间点的 DEGs 比较显示出不同的特异性。Monocle2 构建了细胞分化轨迹;ADSCs 不仅可以通过从 1 支到 3 支的直接途径分化成成熟的星形胶质细胞,还可以通过间接途径分化成成熟的星形胶质细胞,包括从 1 支到 2 支,然后再到 3 支。SCENIC分析强调了STAT1、MYEF2和SOX6转录因子在ADSCs向星形胶质细胞分化过程中的关键调控作用。ADSCs 可通过两种不同的途径分化为成熟的星形胶质细胞:直接途径和间接途径。在诱导的第 14 天,成熟的星形胶质细胞已经形成,其特点是细胞周期停止有丝分裂。进一步诱导会导致分化细胞发生退行性衰老变化。
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Characteristics of the Dynamic Evolutionary Pathway of ADSCs Induced Differentiation into Astrocytes Based on scRNA-Seq Analysis.

We employed single-cell transcriptome sequencing to reveal the dynamic gene expression changes during the differentiation of adipose-derived stromal cells (ADSCs) into astrocytes. Single-cell RNA sequencing was conducted on cells from the ADSCs group and the induced groups at 2, 7, 14, and 21 days using the 10 × Chromium platform. Data underwent quality control and dimensionality reduction. Cell differentiation trajectories were constructed using Monocle2, and differentially expressed genes (DEGs) in each cell cluster were identified using differential selection algorithms. DEGs at each time point were annotated using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG), and regulatory intensities of transcription factors were analyzed using SCENIC. Integrating all groups, a total of five samples were divided into 13 cell clusters (0-12 clusters). DEGs between clusters and those compared with ADSCs at various induced time points showed distinct specificities. Monocle2 constructed cell differentiation trajectories; ADSCs can differentiate into mature astrocytes not only through the direct pathway from the 1 branch to the 3 branch but also through an indirect pathway, involving the 1 branch to the 2 branch before progressing to the 3 branch. SCENIC analysis highlighted the critical regulatory roles of STAT1, MYEF2, and SOX6 transcription factors during the differentiation of ADSCs into astrocytes. ADSCs can differentiate into mature astrocytes through two distinct pathways: direct and indirect. By the 14th day of induction, mature astrocytes have formed, characterized by a cell cycle arrest in mitosis. Further induction leads to degenerative senescence changes in differentiated cells.

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来源期刊
Molecular Neurobiology
Molecular Neurobiology 医学-神经科学
CiteScore
9.00
自引率
2.00%
发文量
480
审稿时长
1 months
期刊介绍: Molecular Neurobiology is an exciting journal for neuroscientists needing to stay in close touch with progress at the forefront of molecular brain research today. It is an especially important periodical for graduate students and "postdocs," specifically designed to synthesize and critically assess research trends for all neuroscientists hoping to stay active at the cutting edge of this dramatically developing area. This journal has proven to be crucial in departmental libraries, serving as essential reading for every committed neuroscientist who is striving to keep abreast of all rapid developments in a forefront field. Most recent significant advances in experimental and clinical neuroscience have been occurring at the molecular level. Until now, there has been no journal devoted to looking closely at this fragmented literature in a critical, coherent fashion. Each submission is thoroughly analyzed by scientists and clinicians internationally renowned for their special competence in the areas treated.
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