人正常肝细胞模型中环境镉诱导的 circRNA-miRNA-mRNA 网络调控机制

IF 2.9 Q2 TOXICOLOGY Current Research in Toxicology Pub Date : 2024-01-01 DOI:10.1016/j.crtox.2024.100192
Zhi Qu , Lugang Deng , Chunqian Feng , Peisen Guo , Peixi Wang , Nan Liu
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摘要

目前,已证实数百种长非编码 RNA(lncRNA)和微 RNA(miRNA)与镉(Cd)的毒性有关。然而,环状 RNA(circRNA)在镉毒性中的作用及其潜在调控机制仍不清楚。在本研究中,我们选择人类正常肝细胞(L-02)作为模型,研究暴露于镉后转录组表达水平的变化。用 Trizol 法提取每个样本的总 RNA,通过芯片杂交和扫描测定每个样本的 circRNA、miRNA 和 mRNA 的表达谱。对数据进行标准化处理后,确定了与镉毒性效应相关的差异 circRNA、miRNA 和 mRNA。通过筛选预测的circRNA、miRNA和mRNA,我们构建了一个竞争性内源性RNA(ceRNA)网络,并预测了受镉毒性影响的主要生物功能和代谢途径。通过我们的综合筛选策略,发现了266种不同的circRNA、223种不同的miRNA和519种不同的mRNA有差异表达。经过进一步筛选,甚至有circRNA、10个miRNA和97个mRNA被纳入ceRNA网络。在对ceRNA网络中的97个mRNA进行GO富集和KEGG通路分析后,结果表明ceRNA网络中的circRNA在L-02细胞受Cd诱导的毒性损伤作用下,可调节细胞增殖、凋亡、氧化应激和炎症反应等关键细胞过程。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Environmental cadmium-induced circRNA-miRNA-mRNA network regulatory mechanism in human normal liver cell model

At present, hundreds of long non-coding RNAs (lncRNAs) and microRNAs (miRNAs) have been confirmed to be related to the toxicity of cadmium (Cd). However, the role of circular RNAs (circRNAs) in the toxicity of Cd and the underlying regulatory mechanisms remain unclear. In this study, we chose human normal liver cells (L-02) as a model to investigate changes in transcriptome expression levels following exposure to Cd. Total RNA of each sample was extracted by Trizol method, and the expression profiles of circRNAs, miRNAs and mRNAs of each sample were determined by microarray hybridization and scanning. After standardizing the data, differential circRNAs, miRNAs, and mRNAs associated with the toxic effects of Cd were identified. By screening the predicted circRNAs, miRNAs, and mRNAs, we constructed a competing endogenous RNA (ceRNA) network, and predicted the main biological functions and metabolic pathways influenced by Cd toxicity. Our comprehensive screening strategy led to the identification of 266 different circRNAs, 223 different miRNAs and 519 different mRNAs exhibiting differential expression. Following further screening, even circRNAs, 10 miRNAs and 97 mRNAs were incorporated into the ceRNA network. After performing GO enrichment and KEGG pathway analyses on the 97 mRNAs within the ceRNA network, which indicated that the circRNAs in the ceRNA network are poised to modulate key cellular processes, including cell proliferation, apoptosis, oxidative stress and inflammatory responses under the toxic effects of Cd-induced damage in L-02 cells.

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来源期刊
Current Research in Toxicology
Current Research in Toxicology Environmental Science-Health, Toxicology and Mutagenesis
CiteScore
4.70
自引率
3.00%
发文量
33
审稿时长
82 days
期刊最新文献
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