基于血液转录组开发创伤后多器官衰竭/功能障碍综合征的生物标志物预测模型。

IF 5.7 1区 医学 Q1 CRITICAL CARE MEDICINE Annals of Intensive Care Pub Date : 2024-08-28 DOI:10.1186/s13613-024-01364-5
Ivan Duran, Ankita Banerjee, Patrick J Flaherty, Yok-Ai Que, Colleen M Ryan, Laurence G Rahme, Amy Tsurumi
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引用次数: 0

摘要

背景:多器官衰竭/功能障碍综合征(MOF/MODS)是严重创伤患者死亡和发病的主要原因。目前的临床实践需要监测生理测量值并应用临床评分系统来诊断其发病。相反,我们的目标是通过对创伤后 24 小时内抽取的血液样本中的全基因组转录组数据进行机器学习分析,开发出创伤后不久评估 MOF 结果的早期预测模型。然后,我们将其性能与基线损伤严重程度评分和感染检测进行了比较:我们使用了来自炎症和宿主对损伤的反应研究("Glue Grant")多中心队列的钝性创伤患者的水洗外套转录组和相关临床数据集。根据纳入/排除标准,我们分析了141名成年(年龄≥16岁)钝性创伤患者(不包括穿透性创伤)的早期水包膜(创伤后≤24小时)样本,其中有58例MOF病例和83例非病例。我们采用最小绝对收缩和选择操作器(LASSO)和极梯度提升(XGBoost)算法来选择特征并开发用于MOF早期结果预测的模型:LASSO模型包括18个转录本(AUROC [95% CI]:0.938[0.890-0.987](训练)和 0.833 [0.699-0.967](测试)),XGBoost 模型包括 41 个转录本(0.999 [0.997-1.000](训练)和 0.907 [0.816-0.998](测试))。两组比较有 16 个重叠转录本(0.935 [0.884-0.985](训练)和 0.836 [0.703-0.968](测试))。生物标志物模型的表现明显优于基于损伤严重程度评分和性别的模型,我们发现损伤严重程度评分和性别与 MOF 显著相关(APACHEII + 性别-0.649 [0.537-0.762](训练)和 0.493[0.301-0.685](测试);ISS + 性别-0.630 [0.516-0.744](训练)和 0.482 [0.293-0.670](测试);NISS + 性别-0.651 [0.540-0.763](训练)和 0.525 [0.335-0.714](测试)):创伤后立即从血液样本中准确评估 MOF 预计将有助于改善临床决策,并可能有助于降低发病率、死亡率和医疗成本。此外,了解被确定为对 MOF 预测重要的转录本的分子机制可能最终有助于开发新型干预措施。
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Development of a biomarker prediction model for post-trauma multiple organ failure/dysfunction syndrome based on the blood transcriptome.

Background: Multiple organ failure/dysfunction syndrome (MOF/MODS) is a major cause of mortality and morbidity among severe trauma patients. Current clinical practices entail monitoring physiological measurements and applying clinical score systems to diagnose its onset. Instead, we aimed to develop an early prediction model for MOF outcome evaluated soon after traumatic injury by performing machine learning analysis of genome-wide transcriptome data from blood samples drawn within 24 h of traumatic injury. We then compared its performance to baseline injury severity scores and detection of infections.

Methods: Buffy coat transcriptome and linked clinical datasets from blunt trauma patients from the Inflammation and the Host Response to Injury Study ("Glue Grant") multi-center cohort were used. According to the inclusion/exclusion criteria, 141 adult (age ≥ 16 years old) blunt trauma patients (excluding penetrating) with early buffy coat (≤ 24 h since trauma injury) samples were analyzed, with 58 MOF-cases and 83 non-cases. We applied the Least Absolute Shrinkage and Selection Operator (LASSO) and eXtreme Gradient Boosting (XGBoost) algorithms to select features and develop models for MOF early outcome prediction.

Results: The LASSO model included 18 transcripts (AUROC [95% CI]: 0.938 [0.890-0.987] (training) and 0.833 [0.699-0.967] (test)), and the XGBoost model included 41 transcripts (0.999 [0.997-1.000] (training) and 0.907 [0.816-0.998] (test)). There were 16 overlapping transcripts comparing the two panels (0.935 [0.884-0.985] (training) and 0.836 [0.703-0.968] (test)). The biomarker models notably outperformed models based on injury severity scores and sex, which we found to be significantly associated with MOF (APACHEII + sex-0.649 [0.537-0.762] (training) and 0.493 [0.301-0.685] (test); ISS + sex-0.630 [0.516-0.744] (training) and 0.482 [0.293-0.670] (test); NISS + sex-0.651 [0.540-0.763] (training) and 0.525 [0.335-0.714] (test)).

Conclusions: The accurate assessment of MOF from blood samples immediately after trauma is expected to aid in improving clinical decision-making and may contribute to reduced morbidity, mortality and healthcare costs. Moreover, understanding the molecular mechanisms involving the transcripts identified as important for MOF prediction may eventually aid in developing novel interventions.

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来源期刊
Annals of Intensive Care
Annals of Intensive Care CRITICAL CARE MEDICINE-
CiteScore
14.20
自引率
3.70%
发文量
107
审稿时长
13 weeks
期刊介绍: Annals of Intensive Care is an online peer-reviewed journal that publishes high-quality review articles and original research papers in the field of intensive care medicine. It targets critical care providers including attending physicians, fellows, residents, nurses, and physiotherapists, who aim to enhance their knowledge and provide optimal care for their patients. The journal's articles are included in various prestigious databases such as CAS, Current contents, DOAJ, Embase, Journal Citation Reports/Science Edition, OCLC, PubMed, PubMed Central, Science Citation Index Expanded, SCOPUS, and Summon by Serial Solutions.
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