通过植物(元)转录组数据挖掘,将枯草病毒的遗传多样性扩大三倍

IF 2.8 3区 医学 Q3 VIROLOGY Virology Pub Date : 2024-08-29 DOI:10.1016/j.virol.2024.110210
T. Sudharshan Reddy, V. Kavi Sidharthan
{"title":"通过植物(元)转录组数据挖掘,将枯草病毒的遗传多样性扩大三倍","authors":"T. Sudharshan Reddy,&nbsp;V. Kavi Sidharthan","doi":"10.1016/j.virol.2024.110210","DOIUrl":null,"url":null,"abstract":"<div><p>Kitaviruses are plant-infecting, non-systemic disease-causing viruses with multipartite single-stranded RNA genomes. Despite their importance, knowledge on kitaviruses is limited in comparison with other plant virus groups, mainly because of the lesser number of identified and characterized kitaviruses and their isolates. In the present study, we explored plant (meta)transcriptome data available in public domain and identified genome sequences of eighteen putative novel blunerviruses in eighteen plant species, including four gymnosperm and four monocot species. Four RNA segments (RNAs 1–4) of eleven identified viruses were recovered, whilst at least two RNA segments were recovered for the remaining viruses. Phylogenetic analysis grouped the identified viruses with known blunerviruses. Based on genome organization, sequence identities of encoded proteins with known blunerviruses and phylogeny, the identified viruses are regarded as new members of the genus <em>Blunervirus</em>. The study paves way for initiating further studies on understanding biological properties, economic importance and geographical distribution of identified blunerviruses.</p></div>","PeriodicalId":23666,"journal":{"name":"Virology","volume":"599 ","pages":"Article 110210"},"PeriodicalIF":2.8000,"publicationDate":"2024-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Three-fold expansion of the genetic diversity of blunerviruses through plant (meta)transcriptome data-mining\",\"authors\":\"T. Sudharshan Reddy,&nbsp;V. Kavi Sidharthan\",\"doi\":\"10.1016/j.virol.2024.110210\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Kitaviruses are plant-infecting, non-systemic disease-causing viruses with multipartite single-stranded RNA genomes. Despite their importance, knowledge on kitaviruses is limited in comparison with other plant virus groups, mainly because of the lesser number of identified and characterized kitaviruses and their isolates. In the present study, we explored plant (meta)transcriptome data available in public domain and identified genome sequences of eighteen putative novel blunerviruses in eighteen plant species, including four gymnosperm and four monocot species. Four RNA segments (RNAs 1–4) of eleven identified viruses were recovered, whilst at least two RNA segments were recovered for the remaining viruses. Phylogenetic analysis grouped the identified viruses with known blunerviruses. Based on genome organization, sequence identities of encoded proteins with known blunerviruses and phylogeny, the identified viruses are regarded as new members of the genus <em>Blunervirus</em>. The study paves way for initiating further studies on understanding biological properties, economic importance and geographical distribution of identified blunerviruses.</p></div>\",\"PeriodicalId\":23666,\"journal\":{\"name\":\"Virology\",\"volume\":\"599 \",\"pages\":\"Article 110210\"},\"PeriodicalIF\":2.8000,\"publicationDate\":\"2024-08-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Virology\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0042682224002319\",\"RegionNum\":3,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"VIROLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Virology","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0042682224002319","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"VIROLOGY","Score":null,"Total":0}
引用次数: 0

摘要

Kitaviruses 是一种可感染植物的非系统性致病病毒,具有多部分单链 RNA 基因组。尽管小病毒非常重要,但与其他植物病毒类相比,人们对小病毒的了解还很有限,这主要是因为已鉴定和表征的小病毒及其分离物的数量较少。在本研究中,我们探索了公共领域的植物(元)转录组数据,并在 18 种植物(包括 4 种裸子植物和 4 种单子叶植物)中鉴定了 18 种推测的新型钝病毒的基因组序列。在已确定的 11 种病毒中,发现了 4 个 RNA 片段(RNA 1-4),其余病毒至少发现了 2 个 RNA 片段。系统进化分析将鉴定出的病毒与已知的钝病毒进行了分组。根据基因组结构、编码蛋白序列与已知布农病毒的相同性和系统进化,确定的病毒被视为布农病毒属的新成员。这项研究为进一步了解所发现的布农病毒的生物学特性、经济重要性和地理分布情况铺平了道路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Three-fold expansion of the genetic diversity of blunerviruses through plant (meta)transcriptome data-mining

Kitaviruses are plant-infecting, non-systemic disease-causing viruses with multipartite single-stranded RNA genomes. Despite their importance, knowledge on kitaviruses is limited in comparison with other plant virus groups, mainly because of the lesser number of identified and characterized kitaviruses and their isolates. In the present study, we explored plant (meta)transcriptome data available in public domain and identified genome sequences of eighteen putative novel blunerviruses in eighteen plant species, including four gymnosperm and four monocot species. Four RNA segments (RNAs 1–4) of eleven identified viruses were recovered, whilst at least two RNA segments were recovered for the remaining viruses. Phylogenetic analysis grouped the identified viruses with known blunerviruses. Based on genome organization, sequence identities of encoded proteins with known blunerviruses and phylogeny, the identified viruses are regarded as new members of the genus Blunervirus. The study paves way for initiating further studies on understanding biological properties, economic importance and geographical distribution of identified blunerviruses.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Virology
Virology 医学-病毒学
CiteScore
6.00
自引率
0.00%
发文量
157
审稿时长
50 days
期刊介绍: The journal features articles on virus replication, virus-host biology, viral pathogenesis, immunity to viruses, virus structure, and virus evolution and ecology. We aim to publish papers that provide advances to the understanding of virus biology.
期刊最新文献
Virome analysis unveils a rich array of newly identified viruses in the red swamp crayfish Procambarus clarkii Viral condensates formed by Pea enation mosaic virus 2 sequester ribosomal components and suppress translation Editorial Board In vitro characteristics of purified recombinant hepatitis C virus core protein Two amino acid pairs in the Gc glycoprotein of severe fever with thrombocytopenia syndrome virus responsible for the enhanced virulence
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1