构建并验证基于生物信息学的杯突症相关基因筛选和阿尔茨海默病风险模型。

IF 3.4 3区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Molecular medicine reports Pub Date : 2024-11-01 Epub Date: 2024-09-02 DOI:10.3892/mmr.2024.13318
Rui Hu, Zhen Xiao, Mingyu Qiao, Chaoyu Liu, Guiyou Wu, Yunyi Wang, Mingyou Dong, Zhongshi Huang
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引用次数: 0

摘要

本研究旨在从生物信息学和实验角度验证核心杯突基因(CRGs)与阿尔茨海默病(AD)之间的关联,并建立一个风险预测模型。为此,研究人员分析了来自 GSE109887 的 78 个人源时背样本,并通过聚类分析、加权基因共表达网络分析和类似方法探讨了所得到的 CRGs 的生物学功能,以确定最佳机器模型。此外,还使用了外部数据集 GSE33000 和提名图来验证模型。利用SH-SY5Y细胞模型和Sprague-Dawley大鼠动物模型验证了CRGs的mRNA和蛋白质表达。RT-qPCR和Western blotting结果显示,AD患者二氢脂酰胺脱氢酶、铁氧还蛋白1、谷氨酰胺酶和丙酮酸脱氢酶E1亚基β的mRNA和蛋白表达量减少,二氢脂酰胺支链转酰酶E2的表达量增加,这支持了生物信息学分析结果。CRG表达的改变影响了某些免疫细胞的聚集和浸润。本研究还证实了AD诊断模型和提名图的准确性和有效性,并验证了五种CRGs与AD之间的关联,表明AD患者与健康人之间存在显著差异。因此,CRGs有望成为诊断和监测AD预后的相关生物标志物。
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Construction and validation of a bioinformatics‑based screen for cuproptosis‑related genes and risk model for Alzheimer's disease.

The present study aimed to validate the association between core cuproptosis genes (CRGs) and Alzheimer's disease (AD) from both bioinformatics and experimental perspectives and also to develop a risk prediction model. To this end, 78 human‑derived temporal back samples were analyzed from GSE109887, and the biological functions of the resulting CRGs were explored by cluster analysis, weighted gene co‑expression network analysis and similar methods to identify the best machine model. Moreover, an external dataset GSE33000 and a nomogram were used to validate the model. The mRNA and protein expression of CRGs were validated using the SH‑SY5Y cell model and the Sprague‑Dawley rat animal model. The RT‑qPCR and western blotting results showed that the mRNA and protein expression content of dihydrolipoamide dehydrogenase, ferredoxin 1, glutaminase and pyruvate dehydrogenase E1 subunit β decreased, and the expression of dihydrolipoamide branched chain transacylase E2 increased in AD, which supported the bioinformatic analysis results. The CRG expression alterations affected the aggregation and infiltration of certain immune cells. The present study also confirmed the accuracy and validity of AD diagnostic models and nomograms, and validated the association between five CRGs and AD, indicating a significant difference between patients with AD and healthy individuals. Therefore, CRGs are expected to serve as relevant biomarkers for the diagnosis and prognostic monitoring of AD.

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来源期刊
Molecular medicine reports
Molecular medicine reports 医学-病理学
CiteScore
7.60
自引率
0.00%
发文量
321
审稿时长
1.5 months
期刊介绍: Molecular Medicine Reports is a monthly, peer-reviewed journal available in print and online, that includes studies devoted to molecular medicine, underscoring aspects including pharmacology, pathology, genetics, neurosciences, infectious diseases, molecular cardiology and molecular surgery. In vitro and in vivo studies of experimental model systems pertaining to the mechanisms of a variety of diseases offer researchers the necessary tools and knowledge with which to aid the diagnosis and treatment of human diseases.
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