refseqR:一个 R 软件包,用于对 RefSeq 数据库中的记录进行常见计算操作。

IF 2.4 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY Bioinformatics advances Pub Date : 2024-08-21 eCollection Date: 2024-01-01 DOI:10.1093/bioadv/vbae122
Jose V Die
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引用次数: 0

摘要

摘要:我们介绍的 refseqR 是一个 R 软件包,它提供了一个用户友好的解决方案,能够对 RefSeq 条目(GenBank、NCBI)进行常见的计算操作。该软件包专为与 RefSeq 数据库中的记录进行交互而设计。最重要的是,与多个 Bioconductor 对象的互操作性和集成性允许将连接应用于其他项目:refseqR 软件包是用 R 语言实现的,以 MIT 开源许可证发布。源代码、文档和使用说明可在 CRAN (https://CRAN.R-project.org/package=refseqR) 上获取。
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refseqR: an R package for common computational operations with records on RefSeq collection.

Summary: We introduce refseqR, an R package that offers a user-friendly solution, enabling common computational operations on RefSeq entries (GenBank, NCBI). The package is specifically designed to interact with records curated from the RefSeq database. Most importantly, the interoperability and integration with several Bioconductor objects allow connections to be applied to other projects.

Availability and implementation: The package refseqR is implemented in R and published under the MIT open-source license. The source code, documentation, and usage instructions are available on CRAN (https://CRAN.R-project.org/package=refseqR).

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