激酶药物发现:开放科学与人工智能的影响。

IF 4.5 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Molecular Pharmaceutics Pub Date : 2024-10-07 Epub Date: 2024-09-06 DOI:10.1021/acs.molpharmaceut.4c00659
Filip Miljković, Jürgen Bajorath
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引用次数: 0

摘要

鉴于蛋白激酶(PKs)在信号转导中的核心作用,它们首次被认为与癌症的发生有关,而癌症的发生是由细胞内异常信号转导事件引起的。从那时起,PK 已成为不同治疗领域的主要靶点。治疗干预 PK 依赖性疾病的首选方法是使用小分子抑制其催化磷酸基团转移活性。PK 抑制剂(PKIs)是最受关注的候选药物之一,目前已有 80 种化合物获得批准,几百种正在进行临床试验。随着人类激酶组的阐明以及强大的 PK 表达系统和高通量检测方法的开发,工业和学术环境中产生了大量 PK/PKI 数据,其数量超过了许多其他药物靶点。此外,还报道了数百种 PK 及其与 PKI 复合物的 X 射线结构。大量 PK/PKI 数据已经公开,部分原因是开放科学计划的结果。通过采用数据科学方法,包括开发各种专业数据库和在线资源,进一步支持了 PK 药物的发现。与其他靶点相比,化合物和活性数据的丰富性也使 PK 成为制药研究中人工智能(AI)应用的焦点。在此,我们将讨论开放科学和数据科学在 PK 药物发现中的相互作用,并回顾对其发展做出重大贡献的典范研究,包括激肽组谱分析或 PKI 杂合性与选择性分析。鉴于人工智能方法越来越以数据为导向,我们还将仔细研究人工智能方法如何开始影响 PK 药物发现。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Kinase Drug Discovery: Impact of Open Science and Artificial Intelligence.

Given their central role in signal transduction, protein kinases (PKs) were first implicated in cancer development, caused by aberrant intracellular signaling events. Since then, PKs have become major targets in different therapeutic areas. The preferred approach to therapeutic intervention of PK-dependent diseases is the use of small molecules to inhibit their catalytic phosphate group transfer activity. PK inhibitors (PKIs) are among the most intensely pursued drug candidates, with currently 80 approved compounds and several hundred in clinical trials. Following the elucidation of the human kinome and development of robust PK expression systems and high-throughput assays, large volumes of PK/PKI data have been produced in industrial and academic environments, more so than for many other pharmaceutical targets. In addition, hundreds of X-ray structures of PKs and their complexes with PKIs have been reported. Substantial amounts of PK/PKI data have been made publicly available in part as a result of open science initiatives. PK drug discovery is further supported through the incorporation of data science approaches, including the development of various specialized databases and online resources. Compound and activity data wealth compared to other targets has also made PKs a focal point for the application of artificial intelligence (AI) in pharmaceutical research. Herein, we discuss the interplay of open and data science in PK drug discovery and review exemplary studies that have substantially contributed to its development, including kinome profiling or the analysis of PKI promiscuity versus selectivity. We also take a close look at how AI approaches are beginning to impact PK drug discovery in light of their increasing data orientation.

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来源期刊
Molecular Pharmaceutics
Molecular Pharmaceutics 医学-药学
CiteScore
8.00
自引率
6.10%
发文量
391
审稿时长
2 months
期刊介绍: Molecular Pharmaceutics publishes the results of original research that contributes significantly to the molecular mechanistic understanding of drug delivery and drug delivery systems. The journal encourages contributions describing research at the interface of drug discovery and drug development. Scientific areas within the scope of the journal include physical and pharmaceutical chemistry, biochemistry and biophysics, molecular and cellular biology, and polymer and materials science as they relate to drug and drug delivery system efficacy. Mechanistic Drug Delivery and Drug Targeting research on modulating activity and efficacy of a drug or drug product is within the scope of Molecular Pharmaceutics. Theoretical and experimental peer-reviewed research articles, communications, reviews, and perspectives are welcomed.
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