Salvatore Cuomo, Mariapia De Rosa, Francesco Piccialli, Laura Pompameo, Vincenzo Vocca
{"title":"通过物理信息神经网络预测土壤微生物群生长的数值方法","authors":"Salvatore Cuomo, Mariapia De Rosa, Francesco Piccialli, Laura Pompameo, Vincenzo Vocca","doi":"10.1016/j.apnum.2024.08.025","DOIUrl":null,"url":null,"abstract":"<div><p>In recent years, there has been a growing interest in leveraging Scientific Machine Learning (SciML) techniques to address challenges in solving Partial Differential Equations (PDEs). This study focuses on forecasting the growth of microbial populations in soil using a novel numerical methodology, the Physics-Informed Neural Network (PINN). This approach is crucial in overcoming the inherent challenges associated with the general unculturability of soil bacteria. PINNs can be used to model the growth of bacterial and fungal populations, considering environmental factors like temperature, solar radiation, air humidity, soil hydration status, and external weather conditions. In this paper, some stability issues related to the mathematical model have been analyzed. Moreover, by utilizing field data and applying equations that describe the biological mechanisms of microbial growth, a PINN was trained to predict the development of the microbiota over time. The results demonstrate that the use of PINNs for studying microbial growth and evolution is a promising tool for enhancing agriculture, optimizing cultivation processes, and facilitating efficient resource management.</p></div>","PeriodicalId":8199,"journal":{"name":"Applied Numerical Mathematics","volume":"207 ","pages":"Pages 97-110"},"PeriodicalIF":2.2000,"publicationDate":"2024-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A numerical approach for soil microbiota growth prediction through physics-informed neural network\",\"authors\":\"Salvatore Cuomo, Mariapia De Rosa, Francesco Piccialli, Laura Pompameo, Vincenzo Vocca\",\"doi\":\"10.1016/j.apnum.2024.08.025\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>In recent years, there has been a growing interest in leveraging Scientific Machine Learning (SciML) techniques to address challenges in solving Partial Differential Equations (PDEs). This study focuses on forecasting the growth of microbial populations in soil using a novel numerical methodology, the Physics-Informed Neural Network (PINN). This approach is crucial in overcoming the inherent challenges associated with the general unculturability of soil bacteria. PINNs can be used to model the growth of bacterial and fungal populations, considering environmental factors like temperature, solar radiation, air humidity, soil hydration status, and external weather conditions. In this paper, some stability issues related to the mathematical model have been analyzed. Moreover, by utilizing field data and applying equations that describe the biological mechanisms of microbial growth, a PINN was trained to predict the development of the microbiota over time. The results demonstrate that the use of PINNs for studying microbial growth and evolution is a promising tool for enhancing agriculture, optimizing cultivation processes, and facilitating efficient resource management.</p></div>\",\"PeriodicalId\":8199,\"journal\":{\"name\":\"Applied Numerical Mathematics\",\"volume\":\"207 \",\"pages\":\"Pages 97-110\"},\"PeriodicalIF\":2.2000,\"publicationDate\":\"2024-09-03\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Applied Numerical Mathematics\",\"FirstCategoryId\":\"100\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0168927424002290\",\"RegionNum\":2,\"RegionCategory\":\"数学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MATHEMATICS, APPLIED\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Applied Numerical Mathematics","FirstCategoryId":"100","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0168927424002290","RegionNum":2,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MATHEMATICS, APPLIED","Score":null,"Total":0}
A numerical approach for soil microbiota growth prediction through physics-informed neural network
In recent years, there has been a growing interest in leveraging Scientific Machine Learning (SciML) techniques to address challenges in solving Partial Differential Equations (PDEs). This study focuses on forecasting the growth of microbial populations in soil using a novel numerical methodology, the Physics-Informed Neural Network (PINN). This approach is crucial in overcoming the inherent challenges associated with the general unculturability of soil bacteria. PINNs can be used to model the growth of bacterial and fungal populations, considering environmental factors like temperature, solar radiation, air humidity, soil hydration status, and external weather conditions. In this paper, some stability issues related to the mathematical model have been analyzed. Moreover, by utilizing field data and applying equations that describe the biological mechanisms of microbial growth, a PINN was trained to predict the development of the microbiota over time. The results demonstrate that the use of PINNs for studying microbial growth and evolution is a promising tool for enhancing agriculture, optimizing cultivation processes, and facilitating efficient resource management.
期刊介绍:
The purpose of the journal is to provide a forum for the publication of high quality research and tutorial papers in computational mathematics. In addition to the traditional issues and problems in numerical analysis, the journal also publishes papers describing relevant applications in such fields as physics, fluid dynamics, engineering and other branches of applied science with a computational mathematics component. The journal strives to be flexible in the type of papers it publishes and their format. Equally desirable are:
(i) Full papers, which should be complete and relatively self-contained original contributions with an introduction that can be understood by the broad computational mathematics community. Both rigorous and heuristic styles are acceptable. Of particular interest are papers about new areas of research, in which other than strictly mathematical arguments may be important in establishing a basis for further developments.
(ii) Tutorial review papers, covering some of the important issues in Numerical Mathematics, Scientific Computing and their Applications. The journal will occasionally publish contributions which are larger than the usual format for regular papers.
(iii) Short notes, which present specific new results and techniques in a brief communication.