利用体外、硅学和网络药理学方法,建立土耳其植物区系中 Gladiolus italicus Mill.

IF 3.2 4区 医学 Q1 Pharmacology, Toxicology and Pharmaceutics Toxicology Mechanisms and Methods Pub Date : 2024-09-08 DOI:10.1080/15376516.2024.2397387
Gokhan Zengin, Mehmet Veysi Cetiz, Nurgul Abul, Ilhami Gulcin, Giovanni Caprioli, Diletta Piatti, Massimo Ricciutelli, Ismail Koyuncu, Ozgur Yuksekdag, Muammer Bahşi, Osman Güler, Muhammad Zakariyyah Aumeeruddy, Mohamad Fawzi Mahomoodally
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引用次数: 0

摘要

目的:方法:对来自土耳其的 Gladiolus italicus Mill.的五种溶剂提取物(正己烷、乙酸乙酯、乙醇、乙醇/水(70%)和水)的化学和生物特性进行评估:方法:测试了抗氧化活性、对涉及慢性病病因的关键酶的抑制特性,以及对不同细胞株的细胞毒性作用。还进行了化学特征描述,以确定每种提取物中最丰富的化合物:结果:水提取物中的总酚含量(TPC)最高,而乙醇/水提取物中的总酚类化合物(TFC)最高。提取物中含量最高的化合物是金丝桃苷(69041.06 mg kg-1)、异槲皮苷(46239.49 mg kg-1)、羽扇豆苷-3,5-二葡萄糖苷(42043.81 mg kg-1)、杨梅素(21486.61 mg kg-1)和山奈酚-3-葡萄糖苷(21199.76 mg kg-1)。分子动力学(MD)模拟证实了这些复合物在 100 ns 内的结构稳定性和动态构象完整性。在网络药理学方面,共筛选出 657 个独特的靶基因:52个与程序性细胞死亡-1(PD-1)相关,85个与血管内皮生长因子受体-2(VEGFR2)相关,130个与成纤维细胞生长因子受体-2(FGFR2)相关,确定了这些蛋白的关键基因相互作用。还进行了基因本体(GO)和京都基因和基因组百科全书(KEGG)通路富集分析,发现了重要的相互作用和通路,如糖尿病并发症中的高级糖化终产物(AGE)及其受体(RAGE)信号通路和 T 辅助细胞 17(Th17)分化等。对涉及 AKT 丝氨酸/苏氨酸激酶 1 (AKT1)、MYC 原癌基因 (MYC)、肿瘤蛋白 53 (TP53)、白细胞介素 6 (IL6) 和肿瘤坏死因子 (TNF) 等关键基因的复杂网络的阐明,为开发治疗非传染性疾病的靶向疗法奠定了良好的基础:这些结果表明,G. italicus 可作为强效抗氧化剂和酶抑制剂的天然来源,需要进一步开发用于生物制药。
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Establishing a link between the chemical composition and biological activities of Gladiolus italicus Mill. from the Turkish flora utilizing in vitro, in silico and network pharmacological methodologies.

Objectives: Five solvent extracts (n-hexane, ethyl acetate, ethanol, ethanol/water (70%), and water) of Gladiolus italicus Mill. from Turkey were evaluated for chemical and biological properties.

Methods: Antioxidant activities, inhibitory properties against key enzymes involved in the etiology of chronic diseases were tested, as well as cytotoxic effects on different cell lines. Chemical characterization was also carried out to determine the most abundant compounds of each extract.

Results: The highest total phenolic content (TPC) was observed in the water extract while highest TFC in ethanol/water extract. The most abundant compounds in the extracts were hyperoside (69041.06 mg kg-1), isoquercitrin (46239.49 mg kg-1), delphindin-3,5-diglucoside (42043.81 mg kg-1), myricetin (21486.61 mg kg-1), and kaempferol-3-glucoside (21199.76 mg kg-1). Molecular dynamic (MD) simulations confirmed the structural stability and dynamic conformational integrity of these complexes over a period of 100 ns. In network pharmacology, A total of 657 unique target genes were screened: 52 associated with programmed cell death-1 (PD-1), 85 with vascular endothelial growth factor receptor-2 (VEGFR2), and 130 with fibroblast growth factor receptor-2 (FGFR2), identifying crucial gene interactions for these proteins. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were conducted, revealing significant interactions and pathways such as the advanced glycation end products (AGE) and their receptors (RAGE) signaling pathway in diabetic complications and T- helper 17 (Th17) cell differentiation, among others. This elucidation of complex networks involving key genes like AKT Serine/Threonine Kinase 1 (AKT1), MYC proto-oncogene (MYC), tumor protein 53 (TP53), Interleukin 6 (IL6), and tumor necrosis factor (TNF) provides a promising foundation for the development of targeted therapies in the treatment of non-communicable diseases.

Conclusion: These results show that G. italicus could be a natural source of potent antioxidants and enzyme inhibitors which need to be further explored for the development of biopharmaceuticals.

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来源期刊
CiteScore
6.60
自引率
3.10%
发文量
66
审稿时长
6-12 weeks
期刊介绍: Toxicology Mechanisms and Methods is a peer-reviewed journal whose aim is twofold. Firstly, the journal contains original research on subjects dealing with the mechanisms by which foreign chemicals cause toxic tissue injury. Chemical substances of interest include industrial compounds, environmental pollutants, hazardous wastes, drugs, pesticides, and chemical warfare agents. The scope of the journal spans from molecular and cellular mechanisms of action to the consideration of mechanistic evidence in establishing regulatory policy. Secondly, the journal addresses aspects of the development, validation, and application of new and existing laboratory methods, techniques, and equipment. A variety of research methods are discussed, including: In vivo studies with standard and alternative species In vitro studies and alternative methodologies Molecular, biochemical, and cellular techniques Pharmacokinetics and pharmacodynamics Mathematical modeling and computer programs Forensic analyses Risk assessment Data collection and analysis.
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