基于染色体级基因组组装分析的一种扩增的气味结合蛋白介导寄生蜂 Baryscapus dioryctriae 对宿主线索的检测

IF 4.4 1区 生物学 Q1 BIOLOGY BMC Biology Pub Date : 2024-09-11 DOI:10.1186/s12915-024-01998-8
Xiaoyan Zhu, Yi Yang, Qiuyao Li, Jing Li, Lin Du, Yanhan Zhou, Hongbo Jin, Liwen Song, Qi Chen, Bingzhong Ren
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引用次数: 0

摘要

Baryscapus dioryctriae(鞘翅目:Eulophidae)是一种寄生蜂,寄生在许多鞘翅目昆虫的蛹上,曾被用作防治松果害虫 Dioryctria 的生物防治剂。该B. dioryctriae组装体的基因组大小为485.5 Mb,等位基因N50为2.17 Mb,利用Hi-C分析将脚手架组装到6条染色体上,使脚手架N50显著增加到91.17 Mb,超过96.13%的组装碱基位于染色体上,分析发现94.73%的BUSCO基因组。共有 54.82% (279.27 Mb)的组装序列由重复序列组成,并鉴定出 24 778 个编码蛋白质的基因。比较基因组分析表明,扩增基因主要富集了化感感知、遗传物质合成和免疫反应途径。此外,通过荧光竞争结合和RNAi实验研究了从扩增的嗅觉基因家族中发现的一种具有卵巢偏向表达的气味结合蛋白(BdioOBP45)的功能特征,发现BdioOBP45主要与D. abietella诱导的挥发性化合物结合,表明这种扩增的OBP很可能参与了雌蜂宿主的定位,为今后的研究指明了方向。总之,这项工作不仅为膜翅目的系统学研究提供了新的基因组序列,而且高质量的B. dioryctriae染色体级基因组为研究寄生蜂的分子、进化和寄生过程提供了宝贵的基础。
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An expanded odorant-binding protein mediates host cue detection in the parasitic wasp Baryscapus dioryctriae basis of the chromosome-level genome assembly analysis
Baryscapus dioryctriae (Chalcidodea: Eulophidae) is a parasitic wasp that parasitizes the pupae of many Pyralidae members and has been used as a biological control agent against Dioryctria pests of pinecones. This B. dioryctriae assembly has a genome size of 485.5 Mb with a contig N50 of 2.17 Mb, and scaffolds were assembled onto six chromosomes using Hi-C analysis, significantly increasing the scaffold N50 to 91.17 Mb, with more than 96.13% of the assembled bases located on chromosomes, and an analysis revealed that 94.73% of the BUSCO gene set. A total of 54.82% (279.27 Mb) of the assembly was composed of repetitive sequences and 24,778 protein-coding genes were identified. Comparative genomic analysis demonstrated that the chemosensory perception, genetic material synthesis, and immune response pathways were primarily enriched in the expanded genes. Moreover, the functional characteristics of an odorant-binding protein (BdioOBP45) with ovipositor-biased expression identified from the expanded olfactory gene families were investigated by the fluorescence competitive binding and RNAi assays, revealing that BdioOBP45 primarily binds to the D. abietella-induced volatile compounds, suggesting that this expanded OBP is likely involved in locating female wasp hosts and highlighting a direction for future research. Taken together, this work not only provides new genomic sequences for the Hymenoptera systematics, but also the high-quality chromosome-level genome of B. dioryctriae offers a valuable foundation for studying the molecular, evolutionary, and parasitic processes of parasitic wasps.
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来源期刊
BMC Biology
BMC Biology 生物-生物学
CiteScore
7.80
自引率
1.90%
发文量
260
审稿时长
3 months
期刊介绍: BMC Biology is a broad scope journal covering all areas of biology. Our content includes research articles, new methods and tools. BMC Biology also publishes reviews, Q&A, and commentaries.
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